PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G091000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 448aa MW: 51657.5 Da PI: 6.2089

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G091000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.3e-24	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m+erg +sp+qC++k+++lnkrykk++++ +++ +++++++ Manes.18G091000.1.p 121 KWTDKMVRLLITAVSYIGEDATSDCgggmrrkfavlQKKGKWKSISKVMAERGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVEN 210 7*******************99888999999999********************************************56999988 PP trihelix 79 cpyfdql 85 +++d + Manes.18G091000.1.p 211 PALLDVI 217 8887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-22	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGNLSQGSM IPGGNPFGGL DLQGSIRVHQ QAQHQHSVPH QQHPLHRQGS SVHPSIHEGF 60 PLTMGTMHNS DQIISMTDYS KGDKGKNSAS DDDEPSYTED GADGHNDASR GRKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED ATSDCGGGMR RKFAVLQKKG KWKSISKVMA ERGHLVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKEDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDNDDVRK HQHDDIDDDD DQEVEIDDHD 300 ELEENQPEHG DSRRMHGVLD PSVKRFRQGQ CLEDACFGNS SQDGNKGSYS HLQIAQVDMN 360 QVSSESTRAA WLQKQWIESR MVQLEEQKLQ IQQEMLELEK QRFKWQRFCW KRDRELEKLR 420 MENERMKLEN ERMELELKRK EMSIEFT*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGNLSQGSM IPGGNPFGGL DLQGSIRVHQ QAQHQHSVPH QQHPLHRQGS SVHPSIHEGF  60
PLTMGTMHNS DQIISMTDYS KGDKGKNSAS DDDEPSYTED GADGHNDASR GRKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED ATSDCGGGMR RKFAVLQKKG KWKSISKVMA ERGHLVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKEDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDNDDVRK HQHDDIDDDD DQEVEIDDHD  300
ELEENQPEHG DSRRMHGVLD PSVKRFRQGQ CLEDACFGNS SQDGNKGSYS HLQIAQVDMN  360
QVSSESTRAA WLQKQWIESR MVQLEEQKLQ IQQEMLELEK QRFKWQRFCW KRDRELEKLR  420
MENERMKLEN ERMELELKRK EMSIEFT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G091000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601213.1	0.0	stress response protein NST1-like
Refseq	XP_021601214.1	0.0	stress response protein NST1-like
Refseq	XP_021601215.1	0.0	stress response protein NST1-like
TrEMBL	A0A2C9U1L2	0.0	A0A2C9U1L2_MANES; Uncharacterized protein
STRING	XP_002532438.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-155	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Manes.18G091000.1.p