PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G082400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 25284.1 Da    PI: 8.9853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G082400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.31e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s
  Manes.18G082400.1.p  9 KRIENLSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 59
                         79***********************************************96 PP
2K-box79.39.5e-2771168198
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y+k+sgk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL++keL+ +e++L+++l ++R k++e+++++ ++ +  e+e++e 
  Manes.18G082400.1.p  71 YHKHSGKRLWDAKHENLSNEIDRIKKENDNMQIELRHLKGEDISSLQHKELMAIEEALDHGLASVRHKQMEYYKMKKRNDKLLEDENKEL 160
                          899*************************************************************************************** PP

                K-box  91 nkaLrkkl 98 
                             L++  
  Manes.18G082400.1.p 161 RFVLQQHE 168
                          99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.45E-40280No hitNo description
SuperFamilySSF554557.33E-36296IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1782162IPR002487Transcription factor, K-box
PROSITE profilePS5129714.30584172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENLSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP  60
STTLVEILDM YHKHSGKRLW DAKHENLSNE IDRIKKENDN MQIELRHLKG EDISSLQHKE  120
LMAIEEALDH GLASVRHKQM EYYKMKKRND KLLEDENKEL RFVLQQHEMD MEEHMREMEN  180
PYHQQRMRDF NYQMPFAFRV QPIQPNLQDR I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-17175173MEF2 CHIMERA
6byy_B4e-17175173MEF2 CHIMERA
6byy_C4e-17175173MEF2 CHIMERA
6byy_D4e-17175173MEF2 CHIMERA
6bz1_A4e-17191183MEF2 CHIMERA
6bz1_B4e-17191183MEF2 CHIMERA
6bz1_C4e-17191183MEF2 CHIMERA
6bz1_D4e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G082400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601944.11e-156floral homeotic protein PMADS 2-like
SwissprotQ0HA251e-121MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2C9U1H41e-155A0A2C9U1H4_MANES; Uncharacterized protein
STRINGcassava4.1_022750m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]