PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G066500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 1217aa MW: 134279 Da PI: 5.4633

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G066500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	343	366	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC++C++ F +++L +H+ + H Manes.18G066500.1.p 343 YKCHKCTMAFDKSDDLLQHLLSsH 366 9*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.337	240	313	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	6.4E-5	242	294	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	1.4E-6	243	292	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	8.17E-9	244	305	IPR016177	DNA-binding domain
SMART	SM00355	0.03	343	366	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.764	343	372	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	345	367	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.64	390	412	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.12	390	417	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	392	412	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence Send to blast
MATATVDASA SNHHLNHLHA ESLPLIDLRL LSQSELLSLS FCSSLRYSQN DGDVATPKID 60 RSVFNESAGS RKQTFSRLRL APRNNSQFSS SPSIKSPIIP QTAEQGLDEE NSQIISLLKS 120 LFGGNSHSDE KEDSKNNYDN NLVSVPIQYN QFLGFPPTGS ESLENRETIG VDGSKEKEGE 180 MLMMNKNGMK MDLVTLGSTE DPYGEELAQR TVGMYTEAEL VGFLQGLKGE WLTNRKKKMI 240 VEASVLGNVL PSGWKLMLCI KKKASFFWIA CRRYISPSGQ QFMSCKEVSS YLLSSFGLQD 300 ASQPNFGHVD GNDRLIGIVS SGNAAELTLK DDKIGDEKQL GNYKCHKCTM AFDKSDDLLQ 360 HLLSSHHRTP KRLRHEMSMN EEVIIKNGKY ECQFCHKSFE ERHRYNGHLG NHIKDYFKRI 420 EASSGFKTIQ RSPVPPLVGV DPGVSKIQES VGIDMGTIAI NSDIKINDGI SSTAENYKIE 480 ENTTVESYSS KQDIVCSTTN DKTEKRNRVT DVAVENNVYQ GAVSAISSKG NDSICKSSDE 540 KNVECTIGRN NNLGSQEEGS QNCSLAVVGG NQSCAYDKNE DQVCVRLMEE QHKERGSDSG 600 LIVPNSEEKT VDGKTIKDRQ LFSTISCTTT DGRVLFGKEK LEHCSAQENV AINSKEKGSE 660 ACLVVSSGGY QRYGSVLNMH GLSTSTVGEM THKMDSKVGL PSSLGFTCVS NNKVNQVSAI 720 TVNKPKLGEV DKSRNDVQAF GFGSNSTLAV EDMKTINDLE SSYGSCSAFP SWNEQMSFTE 780 NNIKGNPSCT SKIHHQEKES QGSKLTLYAH RQCFGPENVI VNVSNGISEV PNQVQGTCYN 840 NSEHRKAVHV LEGCVTNIEL GRGSNFLLVP SANGLTFALK DDGVLNDTSK NFMQDRIFES 900 NVTEPASDVQ RHVNENYMTN IPCNTMDWSN HKGLKGLCDG EPLTGFDHGH REQEVDVAKS 960 TMLENCSKNC QLVNSGNQHK FSLEDNVTGF YSCNLDEKKR ASLDSSLCLS NSEQVWNVES 1020 NLNRISIGKA QEEPRLEDLN PRRNESVIGF SSRAQNSENV ASGFMWRTDE ENDLLGSFAD 1080 NSSRLVHSSG CFPSYDVMSD KGETEFFGEK FSGISGFEGL RSGSMENMEY NFMNPHSDES 1140 RVFSYDADIA QGLDSSVWLD KEALPLFPKI ASRRCICVWC RNEFHCEALE TETQVGSMGS 1200 TCAACKAKFS GQFNLL*

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence Send to blast

MATATVDASA SNHHLNHLHA ESLPLIDLRL LSQSELLSLS FCSSLRYSQN DGDVATPKID  60
RSVFNESAGS RKQTFSRLRL APRNNSQFSS SPSIKSPIIP QTAEQGLDEE NSQIISLLKS  120
LFGGNSHSDE KEDSKNNYDN NLVSVPIQYN QFLGFPPTGS ESLENRETIG VDGSKEKEGE  180
MLMMNKNGMK MDLVTLGSTE DPYGEELAQR TVGMYTEAEL VGFLQGLKGE WLTNRKKKMI  240
VEASVLGNVL PSGWKLMLCI KKKASFFWIA CRRYISPSGQ QFMSCKEVSS YLLSSFGLQD  300
ASQPNFGHVD GNDRLIGIVS SGNAAELTLK DDKIGDEKQL GNYKCHKCTM AFDKSDDLLQ  360
HLLSSHHRTP KRLRHEMSMN EEVIIKNGKY ECQFCHKSFE ERHRYNGHLG NHIKDYFKRI  420
EASSGFKTIQ RSPVPPLVGV DPGVSKIQES VGIDMGTIAI NSDIKINDGI SSTAENYKIE  480
ENTTVESYSS KQDIVCSTTN DKTEKRNRVT DVAVENNVYQ GAVSAISSKG NDSICKSSDE  540
KNVECTIGRN NNLGSQEEGS QNCSLAVVGG NQSCAYDKNE DQVCVRLMEE QHKERGSDSG  600
LIVPNSEEKT VDGKTIKDRQ LFSTISCTTT DGRVLFGKEK LEHCSAQENV AINSKEKGSE  660
ACLVVSSGGY QRYGSVLNMH GLSTSTVGEM THKMDSKVGL PSSLGFTCVS NNKVNQVSAI  720
TVNKPKLGEV DKSRNDVQAF GFGSNSTLAV EDMKTINDLE SSYGSCSAFP SWNEQMSFTE  780
NNIKGNPSCT SKIHHQEKES QGSKLTLYAH RQCFGPENVI VNVSNGISEV PNQVQGTCYN  840
NSEHRKAVHV LEGCVTNIEL GRGSNFLLVP SANGLTFALK DDGVLNDTSK NFMQDRIFES  900
NVTEPASDVQ RHVNENYMTN IPCNTMDWSN HKGLKGLCDG EPLTGFDHGH REQEVDVAKS  960
TMLENCSKNC QLVNSGNQHK FSLEDNVTGF YSCNLDEKKR ASLDSSLCLS NSEQVWNVES  1020
NLNRISIGKA QEEPRLEDLN PRRNESVIGF SSRAQNSENV ASGFMWRTDE ENDLLGSFAD  1080
NSSRLVHSSG CFPSYDVMSD KGETEFFGEK FSGISGFEGL RSGSMENMEY NFMNPHSDES  1140
RVFSYDADIA QGLDSSVWLD KEALPLFPKI ASRRCICVWC RNEFHCEALE TETQVGSMGS  1200
TCAACKAKFS GQFNLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G066500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600595.1	0.0	uncharacterized protein LOC110606140
TrEMBL	A0A2C9U220	0.0	A0A2C9U220_MANES; Uncharacterized protein
STRING	cassava4.1_000391m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19

Link Out ? help Back to Top
Phytozome	Manes.18G066500.1.p