PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G051700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TALE
Protein Properties Length: 369aa    MW: 42127.2 Da    PI: 6.3825
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G051700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092953302055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Manes.18G051700.2.p 295 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 330
                          4679*****************************885 PP
2ELK37.93.8e-13250271122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++LlrKYsgyL+sLkqE+s
  Manes.18G051700.2.p 250 ELKNHLLRKYSGYLSSLKQELS 271
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-22106150IPR005540KNOX1
PfamPF037902.3E-21107149IPR005540KNOX1
SMARTSM012563.1E-31157208IPR005541KNOX2
PfamPF037919.8E-26161207IPR005541KNOX2
PROSITE profilePS5121311.296250270IPR005539ELK domain
SMARTSM011883.5E-7250271IPR005539ELK domain
PfamPF037892.6E-10250271IPR005539ELK domain
PROSITE profilePS5007113.005270333IPR001356Homeobox domain
SuperFamilySSF466896.84E-20271345IPR009057Homeodomain-like
SMARTSM003898.8E-13272337IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27275336IPR009057Homeodomain-like
CDDcd000861.71E-11282334No hitNo description
PfamPF059201.4E-16290329IPR008422Homeobox KN domain
PROSITE patternPS000270308331IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDEYSQMNEN TTPRGNFLYA PTVLAPNSSP YGRTSSGSNV SNQQTQMPLS SFHLQSSECF  60
QPEAHPIVKT EASTSQHAPK FDHYPLLRAH QALNQQQGNE SSSEVEAIKA KIIAHPQYSN  120
LLEAYMDCQK VGAPPEVAGR LAAARLEFHT KQRSSVSSRD TSKDPELDQF MEAYCDMLVK  180
YREELTRPIQ EAMDFMRRIE TQLNMICNGP LRIFNSDEKS EGIGSSEEDQ ENSGGETELP  240
EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP  300
SETEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA AFYMDGHYMG  360
DGPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G051700.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601359.10.0homeobox protein knotted-1-like 2
RefseqXP_021601361.10.0homeobox protein knotted-1-like 2
SwissprotO041351e-179KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A251IQC60.0A0A251IQC6_MANES; Uncharacterized protein
STRINGcassava4.1_010084m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-150KNOTTED-like from Arabidopsis thaliana