PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G051700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TALE | ||||||||
Protein Properties | Length: 369aa MW: 42127.2 Da PI: 6.3825 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 295 | 330 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Manes.18G051700.1.p 295 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 330 4679*****************************885 PP | |||||||
2 | ELK | 37.9 | 3.8e-13 | 250 | 271 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Manes.18G051700.1.p 250 ELKNHLLRKYSGYLSSLKQELS 271 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.7E-22 | 106 | 150 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.3E-21 | 107 | 149 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.1E-31 | 157 | 208 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.8E-26 | 161 | 207 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.296 | 250 | 270 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 250 | 271 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-10 | 250 | 271 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 270 | 333 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-20 | 271 | 345 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.8E-13 | 272 | 337 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 275 | 336 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.71E-11 | 282 | 334 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 290 | 329 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 308 | 331 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDEYSQMNEN TTPRGNFLYA PTVLAPNSSP YGRTSSGSNV SNQQTQMPLS SFHLQSSECF 60 QPEAHPIVKT EASTSQHAPK FDHYPLLRAH QALNQQQGNE SSSEVEAIKA KIIAHPQYSN 120 LLEAYMDCQK VGAPPEVAGR LAAARLEFHT KQRSSVSSRD TSKDPELDQF MEAYCDMLVK 180 YREELTRPIQ EAMDFMRRIE TQLNMICNGP LRIFNSDEKS EGIGSSEEDQ ENSGGETELP 240 EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP 300 SETEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA AFYMDGHYMG 360 DGPYRLGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G051700.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601359.1 | 0.0 | homeobox protein knotted-1-like 2 | ||||
Refseq | XP_021601361.1 | 0.0 | homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-179 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A251IQC6 | 0.0 | A0A251IQC6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010084m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-150 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G051700.1.p |