PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G049600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRF

Protein Properties

Length: 628aa MW: 68086.3 Da PI: 8.6379

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G049600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77	1.8e-24	227	271	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Manes.18G049600.1.p 227 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 271 79****************************************985 PP
2	QLQ	62.6	1.1e-21	157	193	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Manes.18G049600.1.p 157 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 193 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-12	157	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.8E-16	158	192	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.066	158	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	227	271	IPR014977	WRC domain
Pfam	PF08879	7.5E-21	228	270	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MDFGIVGLEG LVGSETTSSG FASLASSDPE TKHKWYGSGF LKQERSGTTE DDWRSSKLSK 60 TESMLLPAQR NTLLKSNTST TAAATTTSTL FTDGQQQQQM LSFSCPKSEA LSAERIPQNA 120 TLPYFHLTSS AYTKNTGYNY GSFSSANMHG VLNEARGPFT PSQWMELEHQ ALIYKYITAN 180 VPIPSNLLIP IRKALDSAGF SSFSGGLLRP NTLSWGNFHL GFSSNTDPEP GRCRRTDGKK 240 WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQSGHSAAAA STTTAKSMPT AASSSSMSAT 300 VGGLHGGSGG GSSNSLAITQ QQQLKHLQPD SSSNLSTATP LGRMFLDKEK LSERERLQDS 360 LGLSMLSSNI DLKSKENSFF ISKESSQIEF GLVNSDSLIN PSQNSSSLIN CRNFGSSQDL 420 IDQGTVSQHS VRQFMNDWPK CQSDRSTVSW PQLDVQSDRT QLSISIPMSH TDYMSTTSSP 480 NNEKVTLSPL RLSRDMDPIQ MGLGVGNVLN EQNQRQANWI PISWENSMGG PLGEVLHNTN 540 SSASECKSSS ALNLMTEGWD SSLQIGSSPT GVLQKTTFAS LSNSSAGSSP RAENNKTNEG 600 KTSSYSAVSS SHFQTRPPSE QLSMRKR*

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MDFGIVGLEG LVGSETTSSG FASLASSDPE TKHKWYGSGF LKQERSGTTE DDWRSSKLSK  60
TESMLLPAQR NTLLKSNTST TAAATTTSTL FTDGQQQQQM LSFSCPKSEA LSAERIPQNA  120
TLPYFHLTSS AYTKNTGYNY GSFSSANMHG VLNEARGPFT PSQWMELEHQ ALIYKYITAN  180
VPIPSNLLIP IRKALDSAGF SSFSGGLLRP NTLSWGNFHL GFSSNTDPEP GRCRRTDGKK  240
WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQSGHSAAAA STTTAKSMPT AASSSSMSAT  300
VGGLHGGSGG GSSNSLAITQ QQQLKHLQPD SSSNLSTATP LGRMFLDKEK LSERERLQDS  360
LGLSMLSSNI DLKSKENSFF ISKESSQIEF GLVNSDSLIN PSQNSSSLIN CRNFGSSQDL  420
IDQGTVSQHS VRQFMNDWPK CQSDRSTVSW PQLDVQSDRT QLSISIPMSH TDYMSTTSSP  480
NNEKVTLSPL RLSRDMDPIQ MGLGVGNVLN EQNQRQANWI PISWENSMGG PLGEVLHNTN  540
SSASECKSSS ALNLMTEGWD SSLQIGSSPT GVLQKTTFAS LSNSSAGSSP RAENNKTNEG  600
KTSSYSAVSS SHFQTRPPSE QLSMRKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G049600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600312.1	0.0	growth-regulating factor 1-like
Swissprot	Q6AWY3	1e-110	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2C9U1H8	0.0	A0A2C9U1H8_MANES; Uncharacterized protein
STRING	cassava4.1_003731m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-99	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Manes.18G049600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]