PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G045200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22813.9 Da PI: 7.9754 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.5 | 1.4e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Manes.18G045200.1.p 2 SCNGCRVLRKGCSETCILRSCLhwissPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l Manes.18G045200.1.p 92 HVCQAAVETVLS 103 ******998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.636 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SCLHWISSPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVET VLSGGTLRPI PGILTGFIAP 120 NYDESSDSFS AEACKLRNMW TQSKPYGPIA RENQASDLNL SLTSKLVAAG RTGREKRGRD 180 AMSFYTEESS ETTTFESNGS DSKKLLNLFV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G045200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600875.1 | 1e-154 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 4e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2C9U0K7 | 1e-153 | A0A2C9U0K7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016184m | 1e-154 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-70 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G045200.1.p |