PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G043300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 329aa    MW: 37483.3 Da    PI: 5.4879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G043300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.2e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Manes.18G043300.1.p  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSFFS 58
                         79*******************************************98776 PP
2K-box22.45.2e-09104171370
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                          ++s+ ++++++ e+ qqe+ + k+++e +++++R l G+  ++ +l e +  eq Le++lk++  +K 
  Manes.18G043300.1.p 104 ATSTPAVTDSQLEEFQQEIFRFKSQVEDMEKQIRILEGNLSHTTTLSEAEYQEQILEEALKRVQMRKR 171
                          44555699**********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.913161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30280IPR002100Transcription factor, MADS-box
CDDcd002652.43E-37270No hitNo description
PRINTSPR004044.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSFFSGK  60
KSIEEILTRY VTLPEHERGR LHKQEFLEKA LGKLKAEDDR NHQATSTPAV TDSQLEEFQQ  120
EIFRFKSQVE DMEKQIRILE GNLSHTTTLS EAEYQEQILE EALKRVQMRK RVLEEEYNSS  180
GAPPVSQVQQ LPPKSAFVND FIAEESPNNV LDWFRQREPQ VQILNFLDSN GLLPLRNQVQ  240
HPADVFLPSP ATLLHGQNIN LDDHISPRSG LEEDNTVQGP EFGQVIDVNL SPWAEFYPTG  300
NSSIPTSQPR ERALLELYLS RICTPSTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-17180179Myocyte-specific enhancer factor 2B
1tqe_Q8e-17180179Myocyte-specific enhancer factor 2B
1tqe_R8e-17180179Myocyte-specific enhancer factor 2B
1tqe_S8e-17180179Myocyte-specific enhancer factor 2B
3mu6_A5e-17270168Myocyte-specific enhancer factor 2A
3mu6_B5e-17270168Myocyte-specific enhancer factor 2A
3mu6_C5e-17270168Myocyte-specific enhancer factor 2A
3mu6_D5e-17270168Myocyte-specific enhancer factor 2A
6bz1_A1e-16180179MEF2 CHIMERA
6bz1_B1e-16180179MEF2 CHIMERA
6bz1_C1e-16180179MEF2 CHIMERA
6bz1_D1e-16180179MEF2 CHIMERA
6c9l_A8e-17180179Myocyte-specific enhancer factor 2B
6c9l_B8e-17180179Myocyte-specific enhancer factor 2B
6c9l_C8e-17180179Myocyte-specific enhancer factor 2B
6c9l_D8e-17180179Myocyte-specific enhancer factor 2B
6c9l_E8e-17180179Myocyte-specific enhancer factor 2B
6c9l_F8e-17180179Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G043300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1429130.0GU142913.1 Hevea brasiliensis MADS-box transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601760.10.0agamous-like MADS-box protein AGL66
TrEMBLA0A2C9U0P60.0A0A2C9U0P6_MANES; Uncharacterized protein
STRINGcassava4.1_015534m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-52AGAMOUS-like 66