PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G038400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 263aa    MW: 28983 Da    PI: 7.8546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G038400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08169209954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Manes.18G038400.1.p 169 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 209
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6170209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-6183214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEIDQLKSAT QDQMEMMMMM MDKLPDFYGA YHDVADLAPP SEFPGATTAI NDTVASDAIP  60
HFIDNNPHIG TSPPYMAIPF TSDNAPIHQQ SPPAAFLSNP PTSRWRGAAE FPGPNAYSTP  120
SQKKNSMAAM REMIFRIAAM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR HRRERISERI  180
RILQRLVPGG TKMDTASMLD EAIHYVKFLK TQVQSLERAQ ATRSSSAGIG FPVAMSSGSY  240
LPVGKACLQE PPHQNVQHFE DA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G038400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601890.10.0transcription factor HEC2-like
TrEMBLA0A2C9U0E30.0A0A2C9U0E3_MANES; Uncharacterized protein
STRINGcassava4.1_031672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-42bHLH family protein