PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G025700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 362aa    MW: 41772 Da    PI: 6.4545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G025700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-1931114998
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +++  ++l +p +f+++    k+ ++ +tl+ +sgr+W+v l  + +++++++  GW+eFv+++ L+e+D ++Fk++g+s+f   v +f+
  Manes.18G025700.1.p  31 HSGFDRQLAIPEHFTKNLR--KKLPQVITLRGPSGRTWQVIL--TTNDDTVFFNHGWEEFVNDHVLQEKDLLIFKYNGDSCF--DVLMFD 114
                          4455667*******96655..448889***************..***********************************999..776665 PP
2B346.47.2e-15259339183
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f  v++p +v ++  +++p   +++h  ++   e+++++l++ + ++W  k+ y+k++++  l++GWk+F+ +n+L+e D++vF+
  Manes.18G025700.1.p 259 FMVVMKPTHVYRRFYMSIPSAWTTKHlrSL---EKQDVILRT-KENTWHTKFYYQKSKNSGGLSSGWKSFALSNDLQEFDVCVFE 339
                          77899*********************6433...334688776.899******9999999999**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2222114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.55223116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-2225114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-2025114No hitNo description
SMARTSM010199.3E-1726116IPR003340B3 DNA binding domain
PfamPF023626.7E-1731112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16259341IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-5259353IPR003340B3 DNA binding domain
PfamPF023621.5E-13259339IPR003340B3 DNA binding domain
CDDcd100173.62E-20259356No hitNo description
SuperFamilySSF1019362.35E-15259339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152259358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGEEACRDCR SWEEKIYWTH FQCLHFLQVL HSGFDRQLAI PEHFTKNLRK KLPQVITLRG  60
PSGRTWQVIL TTNDDTVFFN HGWEEFVNDH VLQEKDLLIF KYNGDSCFDV LMFDGQSLCE  120
KAGSYFVRKC GHRENDSGGQ TKRRTGENSF EATLPCPEDY IGGSPLEKSA NNDIDTTPLG  180
QHNTYRYVTK KIRREIEFNP IHEEPSTSAE EIETKPDIEH ISPSVVHSVP YLSSRRLITE  240
EEKQNALQLA QAVLTRDGFM VVMKPTHVYR RFYMSIPSAW TTKHLRSLEK QDVILRTKEN  300
TWHTKFYYQK SKNSGGLSSG WKSFALSNDL QEFDVCVFEP GIPVDNAVVL DVNIIRVFHD  360
D*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G025700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601809.10.0B3 domain-containing protein REM16
RefseqXP_021601810.10.0B3 domain-containing protein REM16
TrEMBLA0A2C9U1J10.0A0A2C9U1J1_MANES; Uncharacterized protein
STRINGcassava4.1_010400m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-81B3 family protein