PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G025500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 311aa    MW: 35340.4 Da    PI: 7.5007
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G025500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15651381390
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ++ l+lp  f+++ +gk   + + +++ +s  sW +k+   k++++  ++++GW++Fv  ++L+ gDfvvF+++g++ f
  Manes.18G025500.1.p  65 RSKLSLPVAFCRRLKGKR-LD-KAVVR-SSQGSWHIKV--GKCRKGlLYFEQGWEDFVTHHDLDLGDFVVFEHKGDMVF 138
                          4569**********8873.43.45555.57789*****..999988999***********************9999887 PP
2B353.73.8e-17206295389
                          EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                   B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                          ++ t+s+     + l +p +fa++++++ ++   ++l+++s++ W vkl+   +k+++r  + +kGW eF  +n+LkegD+++F+ld + 
  Manes.18G025500.1.p 206 TTITTSSGADDgSYLDIPAEFASSNNLVRAS--IVVLQNPSSKLWAVKLCSidSKCGKRsALRGKGWHEFYVDNKLKEGDVCLFELDLTr 293
                          555555554443789**********999655..8***************887755555557888*********************98442 PP

                          SE CS
                   B3  88 se 89 
                          ++
  Manes.18G025500.1.p 294 KR 295
                          33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.22353146IPR003340B3 DNA binding domain
SMARTSM010197.3E-759146IPR003340B3 DNA binding domain
CDDcd100172.06E-1164144No hitNo description
Gene3DG3DSA:2.40.330.102.3E-1665148IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-1265138IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1566148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-21195306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19197306IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-14202301No hitNo description
SMARTSM010191.1E-14204309IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844205306IPR003340B3 DNA binding domain
PfamPF023624.2E-14209294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXFRSKLSL PVAFCRRLKG KRLDKAVVRS SQGSWHIKVG KCRKGLLYFE QGWEDFVTHH  120
DLDLGDFVVF EHKGDMVFDA IVFDSSSCEK EFPVSINFSE KSRKEIDNLS DEFESYSHTT  180
EEGNFKGQSP LKDAQSYSPK GPYFITTITT SSGADDGSYL DIPAEFASSN NLVRASIVVL  240
QNPSSKLWAV KLCSIDSKCG KRSALRGKGW HEFYVDNKLK EGDVCLFELD LTRKRSDVVV  300
ITVHIFPLVT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G025500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683425.11e-143B3 domain-containing protein REM7-like isoform X1
TrEMBLA0A2C9U0R21e-180A0A2C9U0R2_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_013968m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-21B3 family protein