PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G020600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 391aa MW: 42105 Da PI: 8.2832

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G020600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	272	310	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Manes.18G020600.2.p 272 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 310 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-5	270	314	No hit	No description
SuperFamily	SSF47459	9.29E-11	270	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-9	274	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
SSGNFNPNCN GVAVNPRHKN ETLIPPLNGS MIQDLGFHWN GNNAGGSFTN QSAHDLQLAK 60 IKHYLSSDSF PKFTETINSP SSIEDSHLSS TTHFKDKQKD ISADLSDKLL LKTISSGFAI 120 NGGHQFSPRQ MYSTTSHDCS TLGSSIPGRG NFSQIYPSIN ISNLSPSQPP ISGSFDMNLQ 180 ALDLLTSKRF SGSFGQPSHD NIGIYNDNIS YSLDRMHMPS CSPSKTSSFT ANQIPEAKRP 240 NDSLMESKAN QQAAPKKSRL ETRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM 300 EAIGYIKFLQ SQVETLSVPY MKSSCNKTST RTTQTNSVME DENDDEAKKD LRSRGLCLVP 360 LSCMSYVTSD GGGGGGGGGI WPLPNFGGGT *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

SSGNFNPNCN GVAVNPRHKN ETLIPPLNGS MIQDLGFHWN GNNAGGSFTN QSAHDLQLAK  60
IKHYLSSDSF PKFTETINSP SSIEDSHLSS TTHFKDKQKD ISADLSDKLL LKTISSGFAI  120
NGGHQFSPRQ MYSTTSHDCS TLGSSIPGRG NFSQIYPSIN ISNLSPSQPP ISGSFDMNLQ  180
ALDLLTSKRF SGSFGQPSHD NIGIYNDNIS YSLDRMHMPS CSPSKTSSFT ANQIPEAKRP  240
NDSLMESKAN QQAAPKKSRL ETRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM  300
EAIGYIKFLQ SQVETLSVPY MKSSCNKTST RTTQTNSVME DENDDEAKKD LRSRGLCLVP  360
LSCMSYVTSD GGGGGGGGGI WPLPNFGGGT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G020600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600750.1	0.0	transcription factor bHLH110-like isoform X4
Swissprot	Q9SFZ3	3e-71	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2C9TZW8	0.0	A0A2C9TZW8_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_009768m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-74	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.18G020600.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]