PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G018200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

SRS

Protein Properties

Length: 324aa MW: 35974.9 Da PI: 8.7663

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G018200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.3	6e-70	89	245	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkq 83 g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr re ++ + Manes.18G018200.1.p 89 GGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQEQQQQQhnqeqqqlqfRGENPKRLRE-NQGGA 177 789**************************************************99988887755554443333333333333.34455 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+l++t+l+ ++++ le++++P+ev+s+avfrcvrvs++d+ +e++aYqtav+igGhvf+G+LydqG++ Manes.18G018200.1.p 178 SSLACTRLA--TTTSGLEVAHFPPEVNSTAVFRCVRVSAMDEPDEQYAYQTAVNIGGHVFRGVLYDQGPD 245 556666655..55667999***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.4E-67	90	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.2E-27	92	134	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.2E-26	196	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAGWFYLSGR EGATSKQEEE KEQHNNLFLY RSNEEIYNKG FEIWPQYYQQ QQNMNSYSSF 60 GVGPSRRSFS DESSRSGFTV MRQGGIGGGG MNCQDCGNQA KKDCAHLRCR TCCKSRGFQC 120 QTHVKSTWVP AAKRRERQQQ LAALQQEQQQ QQHNQEQQQL QFRGENPKRL RENQGGASSL 180 ACTRLATTTS GLEVAHFPPE VNSTAVFRCV RVSAMDEPDE QYAYQTAVNI GGHVFRGVLY 240 DQGPDGRYTS GGESSSGGVQ QLNLITAATT SPAATTTNAS NPGTGALLDP SLYPAPLNAF 300 IAVFFKFNMH PMKLKRSKIE HRN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G018200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011966	0.0	AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600799.1	0.0	protein SHI RELATED SEQUENCE 5-like isoform X1
Refseq	XP_021600800.1	0.0	protein SHI RELATED SEQUENCE 5-like isoform X1
Refseq	XP_021600801.1	0.0	protein SHI RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9LQZ5	3e-90	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2C9TZK3	0.0	A0A2C9TZK3_MANES; Uncharacterized protein
STRING	XP_002510471.1	1e-146	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-68	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.18G018200.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]