PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.17G119400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 373aa MW: 42387.3 Da PI: 8.5341 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 73.5 | 2.3e-23 | 19 | 84 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL++l+++fl+l+ +s+ + + l+++a++L v +rRRiYD++N+Le+++++++k+kn+++wkg Manes.17G119400.1.p 19 RKEKSLGVLCTNFLRLYDRSDVDSIGLDDAATRL---GV--ERRRIYDVVNILESIGVVARKQKNRYSWKG 84 79********************************...**..****************************98 PP | |||||||
2 | E2F_TDP | 76.6 | 2.5e-24 | 145 | 224 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 +eksL+lltq+f+kl+ +s+ +++tl+++a +L+ + +++k+RR+YDi+NV++++nliek ++k+++rw g Manes.17G119400.1.p 145 REKSLWLLTQNFVKLFLCSNVDMITLDNAAVSLLGDghnstAMRTKVRRLYDIANVFSSMNLIEKthhpdSRKPAFRWLG 224 79***************************************************************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.8E-25 | 17 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.63E-16 | 19 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.8E-27 | 19 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-20 | 20 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.0E-22 | 140 | 224 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.5E-30 | 144 | 224 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.28E-12 | 146 | 225 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 8.1E-19 | 146 | 224 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MSSFVSRESD PSGRQFYCRK EKSLGVLCTN FLRLYDRSDV DSIGLDDAAT RLGVERRRIY 60 DVVNILESIG VVARKQKNRY SWKGFDAIPR ALEELKEEGF RENFCASASC NSAKVANENE 120 NEGSSSSKTD GQDNSSGASK SENKREKSLW LLTQNFVKLF LCSNVDMITL DNAAVSLLGD 180 GHNSTAMRTK VRRLYDIANV FSSMNLIEKT HHPDSRKPAF RWLGWRGNNE SVTSLDQPKK 240 RTFGTEITNY NTKRNKVDSS IDWNSNHQEE NVPVEIRCKD MENDCNKNKS DHHTKHSPKC 300 VEFGPFTPVG VQTAGESKNK IESRIEDLER LASTYYPRYN NRVLSDLFGH YVEAWKSWYV 360 EVAVKEKTQK GS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 4e-34 | 19 | 216 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 55 | 76 | RRRIYDVVNILESIGVVARKQK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.17G119400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598792.1 | 0.0 | E2F transcription factor-like E2FF isoform X1 | ||||
Swissprot | Q8RWL0 | 1e-126 | E2FF_ARATH; E2F transcription factor-like E2FF | ||||
TrEMBL | A0A2C9U7F3 | 0.0 | A0A2C9U7F3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008673m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01330.1 | 1e-126 | DP-E2F-like protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.17G119400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|