PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G112700.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 180aa MW: 19584 Da PI: 7.8199

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G112700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk lrrkC ++C+++pyfp e+p+kfa+vhk+FGasnv kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Manes.17G112700.2.p 10 PCAACKSLRRKCLPNCIFSPYFPPEEPQKFAIVHKIFGASNVNKLLNEVLPHQREDAVKSLAYEAEARLKDPVYGCVGAISVLQSQVIKL 99 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+++++ Manes.17G112700.2.p 100 QKELDATQAD 109 **999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.955	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-41	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MASSSYSISP CAACKSLRRK CLPNCIFSPY FPPEEPQKFA IVHKIFGASN VNKLLNEVLP 60 HQREDAVKSL AYEAEARLKD PVYGCVGAIS VLQSQVIKLQ KELDATQADL IRYASSSPSP 120 PSSVLFGRSR MGHGGSSSAS YDQNSVFYYP SPRSNETCGH TQERGDHDKP TEPSNAQDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-60	9	114	10	115	LOB family transfactor Ramosa2.1
5ly0_B	6e-60	9	114	10	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G112700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599051.1	1e-121	LOB domain-containing protein 25-like
Refseq	XP_021599052.1	1e-121	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	9e-61	LBD25_ARATH; LOB domain-containing protein 25
Swissprot	Q9FML4	1e-60	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A251IWB9	1e-129	A0A251IWB9_MANES; Uncharacterized protein
STRING	cassava4.1_025381m	1e-120	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-62	LBD family protein

Link Out ? help Back to Top
Phytozome	Manes.17G112700.2.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]