PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G107800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 267aa    MW: 30713.7 Da    PI: 5.427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G107800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-131461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Manes.17G107800.1.p 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding55.21.6e-1767110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
  Manes.17G107800.1.p  67 RGGFTEMEENQIIQLHSRLGNR-WAKIASHFP-GRTDNEIKNHWNT 110
                          788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.535961IPR017930Myb domain
SuperFamilySSF466891.94E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002495.8E-111461IPR001005SANT/Myb domain
CDDcd001671.44E-41661No hitNo description
PROSITE profilePS5129425.61562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565117IPR009057Homeodomain-like
SMARTSM007179.7E-1766114IPR001005SANT/Myb domain
PfamPF002495.8E-1667110IPR001005SANT/Myb domain
CDDcd001677.20E-1270110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEENQIIQ LHSRLGNRWA KIASHFPGRT DNEIKNHWNT RIKKKLKHIE  120
QTQMSINGGN NETIPERIKE ENMEIKSQDD QANLISTDDK SKGGKDDELV SMEETSELLS  180
NYEMLNGSMD MGSWIKQLET NDTTSYSSSL SVDENKNLSI GESLSLEDMD SILSWDSFNY  240
HLLDDIFFLE NTQYCNIPAD SVPKYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G107800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600021.10.0myb-related protein 315-like
TrEMBLA0A2C9U6Y90.0A0A2C9U6Y9_MANES; Uncharacterized protein
STRINGcassava4.1_028453m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-82myb domain protein 40