PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G096300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 409aa    MW: 46816.3 Da    PI: 8.6165
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-1426111191
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+ +ps  ++++ l++p+kf++++g +   s    +  ++g  W+v+l  +k ++++++ +GW++Fv+   +++g f+vF + g s+f
  Manes.17G096300.1.p  26 FFKIILPSTIHEKK-LRIPNKFVSKFGDE--LSDFANIIVPNGCAWKVRL--TKDQKGIWFDDGWQNFVDHYSINSGYFLVFGYRGFSNF 110
                          89999999999988.********999855..777899999**********..*******************************9776777 PP

                          . CS
                   B3  91 e 91 
                          +
  Manes.17G096300.1.p 111 S 111
                          4 PP
2B356.93.9e-18315398897
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +++ +++l++p +fa+++ +    +k ++l+ ++g++W v l  +k+ gr+ ++kGW+ F+++n+L+ g+++vF+l++++   l+v++f
  Manes.17G096300.1.p 315 QYNF-NNMLYVPSRFAKTYLNR--FHKHIKLQGSDGKEWIVLL-LWKSWGRVDFGKGWNAFCRENNLQGGEVCVFELIKSDV--LKVSLF 398
                          4444.567***********544..6778**************9.79******************************998444..477666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1921117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2022117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-1325116No hitNo description
PROSITE profilePS5086311.7325118IPR003340B3 DNA binding domain
SMARTSM010195.1E-1126118IPR003340B3 DNA binding domain
PfamPF023625.3E-1126111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-24301399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-24302399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.676307401IPR003340B3 DNA binding domain
CDDcd100173.21E-18307398No hitNo description
SMARTSM010191.1E-13309401IPR003340B3 DNA binding domain
PfamPF023621.3E-16313398IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MPSPSEMEPN ANRRLRWLPE RPSQHFFKII LPSTIHEKKL RIPNKFVSKF GDELSDFANI  60
IVPNGCAWKV RLTKDQKGIW FDDGWQNFVD HYSINSGYFL VFGYRGFSNF SIVILDVSAS  120
EIEYPQNDDG SIYGEKCLVH HQIEMENNNS ILDSTLPSPH SSSLKSNVCG VSETKGESGR  180
RYTPLKNRGR KKRFEAVPSM GSPYFKNIYN RRSKKIKMEE LLEIESVDAN ESGRGKFDKF  240
AISNSHGPLV ETNDSTKSEV ELGENELLAK CEEDVEIITS EMFGFKKTFP ESEKAIEAAR  300
KFKPKCPSFM VVLRQYNFNN MLYVPSRFAK TYLNRFHKHI KLQGSDGKEW IVLLLWKSWG  360
RVDFGKGWNA FCRENNLQGG EVCVFELIKS DVLKVSLFGA VQDVKPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1928839828140B3 domain-containing transcription factor VRN1
4i1k_B4e-1928839828140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G096300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598799.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2C9U6L50.0A0A2C9U6L5_MANES; Uncharacterized protein
STRINGcassava4.1_026645m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein