PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G096200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 297aa MW: 33933.5 Da PI: 8.7045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.4e-13 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f +l+ s++ + + l++p +f++++g++ s +l + g +W v l k ++++++ +GW+eF + +++g f+vF+++g+ f + Manes.17G096200.2.p 6 FHKLILSNTIRDKKLRIPDNFVKKFGND--LSAFGRLSVPGGPVWPVGL--IKADDKFWFHEGWQEFMERYSIRVGYFLVFRYEGHAVF--T 91 56677899999999***********877..777899*************..9*******************************998888..8 PP EEEE- CS B3 94 vkvfr 98 v++f+ Manes.17G096200.2.p 92 VHIFN 96 88885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-21 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-17 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-12 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-11 | 7 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MPRPYFHKLI LSNTIRDKKL RIPDNFVKKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW 60 FHEGWQEFME RYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EINYQSNALS GRRFLAFEEM 120 GDDDFVEYLS SSSPYLLPNS LKRNVLLSKG DSISQVTNQA TRDVGVQFNA IEMKNYADDV 180 KFYVPDGEIQ KPKKQGRKKR KIDPNEQQPP ASQEDEAEMR FRFYESASAR KRTVTAEERE 240 RAINAAKAFE PINPFCRVVL RPSYLYRGCI MDSLNSSCVM GNSGLSDAFI GEVELN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-23 | 222 | 271 | 15 | 64 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-23 | 222 | 271 | 15 | 64 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 200 | PKKQGRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G096200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599860.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Swissprot | Q8L3W1 | 4e-89 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2C9U6M7 | 0.0 | A0A2C9U6M7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010446m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-80 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G096200.2.p |
Publications ? help Back to Top | |||
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