PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G096200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 361aa MW: 41489.5 Da PI: 9.443 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 2e-13 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f +l+ s++ + + l++p +f++++g++ s +l + g +W v l k ++++++ +GW+eF + +++g f+vF+++g+ f + Manes.17G096200.1.p 6 FHKLILSNTIRDKKLRIPDNFVKKFGND--LSAFGRLSVPGGPVWPVGL--IKADDKFWFHEGWQEFMERYSIRVGYFLVFRYEGHAVF--T 91 56677899999999***********877..777899*************..9*******************************998888..8 PP EEEE- CS B3 94 vkvfr 98 v++f+ Manes.17G096200.1.p 92 VHIFN 96 88885 PP | |||||||
2 | B3 | 56.5 | 5.2e-18 | 259 | 349 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl ps+ + ++++lp fae++ +g++ ++l+ +g++W v++ yr+++ l++GW eF +n+L egD+++F+l+++++ l Manes.17G096200.1.p 259 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLCDGKQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCIFELMRSRDIVL 343 78899******************866743...48888999********665555..66*************************9999999 PP EEEEE- CS B3 93 vvkvfr 98 +v+vfr Manes.17G096200.1.p 344 KVTVFR 349 999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-21 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-16 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-12 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-10 | 7 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-23 | 248 | 349 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-23 | 250 | 349 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-22 | 254 | 349 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 256 | 351 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-18 | 256 | 351 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-16 | 259 | 349 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MPRPYFHKLI LSNTIRDKKL RIPDNFVKKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW 60 FHEGWQEFME RYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EINYQSNALS GRRFLAFEEM 120 GDDDFVEYLS SSSPYLLPNS LKRNVLLSKG DSISQVTNQA TRDVGVQFNA IEMKNYADDV 180 KFYVPDGEIQ KPKKQGRKKR KIDPNEQQPP ASQEDEAEMR FRFYESASAR KRTVTAEERE 240 RAINAAKAFE PINPFCRVVL RPSYLYRGCI MYLPSCFAEK NLNGVSGFIK LQLCDGKQWP 300 VRCLYRGGRA KLSQGWYEFT LENNLGEGDV CIFELMRSRD IVLKVTVFRV LESAGLVNRP 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-74 | 222 | 352 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-74 | 222 | 352 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 200 | PKKQGRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G096200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599860.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-141 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2C9U6Q9 | 0.0 | A0A2C9U6Q9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010446m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-132 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G096200.1.p |
Publications ? help Back to Top | |||
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