PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G074300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 944aa    MW: 103807 Da    PI: 6.4759
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G074300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Manes.17G074300.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Manes.17G074300.1.p 215 --WNEKNQLLLGIRRT 228
                          ..8899999****997 PP
2Auxin_resp120.11.7e-39253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Manes.17G074300.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYFKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.03E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-21126227No hitNo description
SMARTSM010192.5E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562127229IPR003340B3 DNA binding domain
PfamPF023625.1E-22127228IPR003340B3 DNA binding domain
PfamPF065071.9E-34253336IPR010525Auxin response factor
SuperFamilySSF542774.19E-7765847No hitNo description
PfamPF023093.1E-7768861IPR033389AUX/IAA domain
PROSITE profilePS5174523.8772856IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MRLSSVGFNP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRTNR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYFKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGIKDD DFGMNSPLMW LRGDGDRGIQ SMSFQGLGVT  420
PWMQPRVDAS MLGLQTDMYQ AMAAAALQEM RAIDPSKSST TSLLQFQQHP NLPSRTAALM  480
QPQMLQQPQS QQAFLQGVQE NQHQPRTQVQ TQSHLVQQQL HSQHSLNGPQ QQPQQQQQHP  540
LSQQQLVEHQ QIPNVVSAMS QFASASQSQS PPLPAISSLC QQQSFSDSNG NPVTSSVVSP  600
MHSLIGSFSQ DESTHLINLP RTSALITSSA WPSKRAAVEP LISSGAPQCV LSQVEQLGGP  660
QTNISQSSVS LPPFPGRECS IDQEGGTDPQ SHLLFGFNIE PSSLQLQSGM SSLRGVGSDC  720
DSTTIPFSSS NYMSTTGTDF SLNPAMTPSS CIDESGFLQS PENVGQVNPP TRTFVKVYKS  780
GSFGRSLDIT KFSSYNELRS ELARMFGLEG QLEDPLRSGW QLVFVDREND VLLLGDDPWP  840
EFVNSVWCIK ILSPQEVQQM GKRGLELLNS VPIQRLSNGS CDDYASRQDS RNLSTEVCCV  900
SSSVPCSIVV SAGASLHGVD GIEEVGLRRG VIAPTGVAVL EGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G074300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598206.10.0auxin response factor 6-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2C9U7J90.0A0A2C9U7J9_MANES; Auxin response factor
STRINGcassava4.1_001154m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]