PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G072800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 482aa    MW: 52472.3 Da    PI: 7.5804
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G072800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.14.7e-36842412134
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai +l+++                + s+a     
  Manes.17G072800.1.p  84 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLINAAANAINKLPSLngsfpdtpkqlndekrT-SDA----- 167
                          689*************************************************************88776555555444421.111..... PP

                  TCP  76 esssssas..................nsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                                                    n++++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ ++n
  Manes.17G072800.1.p 168 -------TeqgldsadvelddpnfnqNQNQHLSLSKSACSSTSDTSKGSGLSLSRpdirRNRDKARERARERAAKEKEKEN 241
                          .......11111112222222333223333355555666666777777777777753345559999999997766665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-4385239IPR005333Transcription factor, TCP
PROSITE profilePS5136931.64786144IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.467219237IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEVEEIQTQP SKFSRVGNGR SETSKIGQKG SGDHQYPDDE EEEELKRPNL GCGSIGGAGD  60
DAGSANRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVNT AIQFYDLQDR  120
LGYDQPSKAV EWLINAAANA INKLPSLNGS FPDTPKQLND EKRTSDATEQ GLDSADVELD  180
DPNFNQNQNQ HLSLSKSACS STSDTSKGSG LSLSRPDIRR NRDKARERAR ERAAKEKEKE  240
NDSRIAHHQN MNPISQNSTF TELLTAGISS VSNNDNNNNS NNNGATASPC SEANLFHNKT  300
APSRQWPLTP MDYFGTGLLG TSSSRTTHHP SGFSGQFQLG NSIPPTMTMS IPPFNFSGEN  360
HQEQLQHFPF VSDHLIPVAS TQPGPGADYN LSFTISSGLA GFNRGTLQSN SSSPSLFSHL  420
QRFSSSPIDG STNVPFFIGA AGPPPPPMEN HHHHHQFPPP GLQLCYGDGS RHSEQKGKGK  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2491145155Putative transcription factor PCF6
5zkt_B4e-2491145155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G072800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544671e-175KM454467.1 Jatropha curcas TCP transcription factor BRC1 (BRC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599221.10.0transcription factor TCP2
RefseqXP_021599222.10.0transcription factor TCP2
RefseqXP_021599223.10.0transcription factor TCP2
RefseqXP_021599224.10.0transcription factor TCP2
TrEMBLA0A2C9U7H80.0A0A2C9U7H8_MANES; Uncharacterized protein
STRINGcassava4.1_006620m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-37TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2