PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G067800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20096.6 Da    PI: 11.0107
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G067800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.7e-221055247
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          +++   rqvtfskRr+g++KKA+EL +LC+a++a+++fs+ gk +
  Manes.17G067800.1.p 10 MVKDRNSRQVTFSKRRAGLFKKAHELAILCAAQIAIVVFSPGGKPF 55
                         5788899**********************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.179161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-27174IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.40E-33274No hitNo description
PRINTSPR004042.2E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-213859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.15801.0E-491163IPR000845Nucleoside phosphorylase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009116Biological Processnucleoside metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRRKIEMKM VKDRNSRQVT FSKRRAGLFK KAHELAILCA AQIAIVVFSP GGKPFSFGNP  60
SVESLSERFL DDKGKNSKRG CPFGRSVSRS EKLNKHLGDL QRQVQYERKR AKLLQEAMKK  120
NGLPLNPKPI EEMSVDELMK MRNAMQELRE KMGARVVEME ASSSLLLLSK KFIQEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15165165MEF2C
5f28_B4e-15165165MEF2C
5f28_C4e-15165165MEF2C
5f28_D4e-15165165MEF2C
6byy_A3e-15165165MEF2 CHIMERA
6byy_B3e-15165165MEF2 CHIMERA
6byy_C3e-15165165MEF2 CHIMERA
6byy_D3e-15165165MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G067800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598781.11e-125agamous-like MADS-box protein AGL29
TrEMBLA0A2C9U5V81e-123A0A2C9U5V8_MANES; Uncharacterized protein
STRINGcassava4.1_030129m1e-124(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-41AGAMOUS-like 29