PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G056000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 288aa    MW: 32853.6 Da    PI: 5.8817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G056000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94.1e-1625115186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++ + +L+e+  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++l
  Manes.17G056000.1.p  25 CWSEEATSTLVEVWGKRYLELNRGNLRQKDWQEVADAVnakhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFESL 114
                          7**************************************999999999*************************999888899******99 PP

             trihelix  86 e 86 
                          +
  Manes.17G056000.1.p 115 D 115
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2623116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGDLTDTLTP STTPHSRPLP IREDCWSEEA TSTLVEVWGK RYLELNRGNL RQKDWQEVAD  60
AVNAKHGHTK KTHRTDVQCK NRIDTIKKKY KIEKARVTSS NGTLTSSWPF FESLDTLIGS  120
NFTAKKQAPP SPPVALPLTS YRRTPSSTPP TAAVALPQKR PLDDGYFRRN YSAMAAAAAA  180
AAESESEEEL EEEEEEGGRE RERERENEED EEGEGIRRLA QAIERFGEAY ERVESEKLRQ  240
MLDLEKQRMK FAKDLEMERM RIFTETQIQL EKIKKGKRSG SNGERDY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G056000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599529.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A2C9U6A60.0A0A2C9U6A6_MANES; Uncharacterized protein
STRINGcassava4.1_025208m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-43sequence-specific DNA binding transcription factors