PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G051500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 28616.2 Da PI: 7.6826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.3 | 1.1e-32 | 15 | 112 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 CaaCk+ +rkC++ C l+pyfp e++++++++h++FG sn+ k++k+l+ ++r++a++sl++eA ++ +dPv+G +g ++kl+++ + lk Manes.17G051500.1.p 15 CAACKYVKRKCNECCLLSPYFPVERMADLEAAHRVFGISNMNKMIKRLQVQDRDKAAKSLLWEALIWKQDPVNGPLGQYWKLERENQFLK 104 ****************************************************************************************** PP DUF260 92 aelallke 99 ++l+l+++ Manes.17G051500.1.p 105 NQLNLQQQ 112 ****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.695 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-31 | 15 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPRESNAEPR SKNVCAACKY VKRKCNECCL LSPYFPVERM ADLEAAHRVF GISNMNKMIK 60 RLQVQDRDKA AKSLLWEALI WKQDPVNGPL GQYWKLEREN QFLKNQLNLQ QQVLPYAAMG 120 MQEFNGKETV PNSDFVTNFE TLELDLTMIT GTGNTEQLLS SLSSPLWPNP QDQQCISEER 180 KLPSFRAKEA GNPERSQEIS FCEQGESTVG SNFVHGQQRL TQNTGDFHCP RSAPEPSSRR 240 PEKARTDGSS RS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-18 | 9 | 129 | 6 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-18 | 9 | 129 | 6 | 124 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G051500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2C9U4V8 | 0.0 | A0A2C9U4V8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025578m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14786 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-24 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G051500.1.p |