PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G049300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HB-other

Protein Properties

Length: 1687aa MW: 190641 Da PI: 6.4235

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G049300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.1e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk Manes.17G049300.1.p 31 PKRQMKTPFQLEALEKAYALETYPSEAMRAELSQKLGLSDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	10	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	18	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	27	87	IPR001356	Homeobox domain
SMART	SM00389	3.7E-19	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	3.08E-14	32	87	No hit	No description
SMART	SM00571	1.1E-22	541	600	IPR018501	DDT domain
PROSITE profile	PS50827	16.205	541	600	IPR018501	DDT domain
Pfam	PF02791	6.7E-18	542	597	IPR018501	DDT domain
Pfam	PF05066	4.4E-16	722	790	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	930	974	IPR028942	WHIM1 domain
Pfam	PF15613	4.6E-13	1115	1187	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1687 aa Download sequence Send to blast
METNSEGENQ NRGTSGGNNN IGNSNEGQSK PKRQMKTPFQ LEALEKAYAL ETYPSEAMRA 60 ELSQKLGLSD RQLQMWFCHR RLKDKKETPA KKPRKAVQLT ESPVEEMRAV EPDPDPDPDP 120 VSDYGSGSGS GSSPFMEPRK VYLDDVPMMR RHYESSPQSV MELRAIACVE AQLGEPLRED 180 GPILGMEFDP LPPDAFGAPI AMTEQQKRPL HSYDAKAYER HDAKSSKASA RASHEYPFIQ 240 DQSTMRSDAY GQVARSPYHD PALDILKGKA SFVHEDEPLA KVQGVRLSSQ PGKKGHVFSS 300 LHRDDDYLLQ HESFTNNRIS AHAIGHPIMG SENPDIFPDA QIFHTDTGPQ VGKKCKNDEV 360 RIAREVEAQE NQIRKELEKQ DQLKRKSEER MRKEMERHER ERRKEEERLM RERQREEERS 420 LREQKRELER REKFLQKEYL RAEKRRQKEE LRREREAVKR QAAIEKATAR RIAKESLDLI 480 EDEQLELMEL AAASKGLTSI VHLNYDTLQN LESFRDSLSL FPPESIQLKK PFAIQPWMDS 540 EEHIGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDYDS RLLGEVHFAL LKLIIKDIED 600 VARTPTGLGT NQNCAANPEG GHLQIVEGAY MWGFDIRNWQ RHLNPLTWPE IFRQLALSAG 660 FGPQLKKRSS TWKYLGDNDE VKGCEYTIST LRNGSAAENA FSLMRERGLL LPRRSRHRLT 720 PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA LTRDQKLFER 780 IAPSTYCLRA AYRKDPADAE AILSAARKKI RIFENGFLGG EDGDDVERDE DSEGDVDEDP 840 EVDDLTTPLS ANRSGDHAID ANTCSGSRKD NICNGIPLTA QNDPVKEPSS IHLNGPKDAK 900 TPSSTVQCVP REDVVVRNVD QENIEIDESK SGESWIQGLA EGEYAHLSVE ERLNALVALV 960 GIANEGNTIR AVLEDRLEAA NALKKQMWAE AQLDRSRLKE DILSKLDFPT YIGGKAEMQV 1020 TGSVVEGGQS PLLLDDSKNK EASPRIAEDQ KLFPASGNVQ SNYNSGPTEK ALMVQDLSMN 1080 PDNFSSQQHG YASKRLRSQL KAYIGHIAEE TYVYRSLPLG QDRRRNRYWQ FVASASKNDP 1140 CSGRIFVELH DCNWRLIDSE EAFDALLSSL DTRGIRESHL RIMLQKIEKS FKQNVRRNFT 1200 SKNIVCQNGI AAENEAGEAD SSPNCSAGIS SPSSMVCGSN SDTLDTSSLF KIELGRNEME 1260 KKGAMKRYQD FQKWTWKECF NSLTLHAMKY GKKRCSELLT TCDWCFDSYL AEDPDSVSCH 1320 QTLNAANKSS NFSEHVIQCK VKRKLEPGVC DTSLPLGIRL LKALLAFIEV SVPPEALESF 1380 WMEIHRKTWA TKLNMSSSPE ELLQILTVLE NATKRDFLSA NFEMTKELLG TSISTESALF 1440 GSTDLGPLPV LPWIPKTTAA VALRLFELDG SITYIQHEKA EPSEDKSAKV HLKLPARYSP 1500 FKNKEIELKG PRQYEHVNEE RLTDLHSKRN SQKRRRGGRD QGYGTKWPRR VPGLKSDSNR 1560 RNARENEKFN IGSKQGRRAN AKGSGRGLRT VRRRRTEMMV AEEPVIGRMS NTVGPSSYGG 1620 SLRNLGEENW GVEKVRMDVD DADNSNSVEA EESDDNVEAE GYEQGNWEQS FNRASNRWNR 1680 TVMEMT*

Sequence ? help Back to Top

Protein Sequence Length: 1687 aa Download sequence Send to blast

METNSEGENQ NRGTSGGNNN IGNSNEGQSK PKRQMKTPFQ LEALEKAYAL ETYPSEAMRA  60
ELSQKLGLSD RQLQMWFCHR RLKDKKETPA KKPRKAVQLT ESPVEEMRAV EPDPDPDPDP  120
VSDYGSGSGS GSSPFMEPRK VYLDDVPMMR RHYESSPQSV MELRAIACVE AQLGEPLRED  180
GPILGMEFDP LPPDAFGAPI AMTEQQKRPL HSYDAKAYER HDAKSSKASA RASHEYPFIQ  240
DQSTMRSDAY GQVARSPYHD PALDILKGKA SFVHEDEPLA KVQGVRLSSQ PGKKGHVFSS  300
LHRDDDYLLQ HESFTNNRIS AHAIGHPIMG SENPDIFPDA QIFHTDTGPQ VGKKCKNDEV  360
RIAREVEAQE NQIRKELEKQ DQLKRKSEER MRKEMERHER ERRKEEERLM RERQREEERS  420
LREQKRELER REKFLQKEYL RAEKRRQKEE LRREREAVKR QAAIEKATAR RIAKESLDLI  480
EDEQLELMEL AAASKGLTSI VHLNYDTLQN LESFRDSLSL FPPESIQLKK PFAIQPWMDS  540
EEHIGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDYDS RLLGEVHFAL LKLIIKDIED  600
VARTPTGLGT NQNCAANPEG GHLQIVEGAY MWGFDIRNWQ RHLNPLTWPE IFRQLALSAG  660
FGPQLKKRSS TWKYLGDNDE VKGCEYTIST LRNGSAAENA FSLMRERGLL LPRRSRHRLT  720
PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA LTRDQKLFER  780
IAPSTYCLRA AYRKDPADAE AILSAARKKI RIFENGFLGG EDGDDVERDE DSEGDVDEDP  840
EVDDLTTPLS ANRSGDHAID ANTCSGSRKD NICNGIPLTA QNDPVKEPSS IHLNGPKDAK  900
TPSSTVQCVP REDVVVRNVD QENIEIDESK SGESWIQGLA EGEYAHLSVE ERLNALVALV  960
GIANEGNTIR AVLEDRLEAA NALKKQMWAE AQLDRSRLKE DILSKLDFPT YIGGKAEMQV  1020
TGSVVEGGQS PLLLDDSKNK EASPRIAEDQ KLFPASGNVQ SNYNSGPTEK ALMVQDLSMN  1080
PDNFSSQQHG YASKRLRSQL KAYIGHIAEE TYVYRSLPLG QDRRRNRYWQ FVASASKNDP  1140
CSGRIFVELH DCNWRLIDSE EAFDALLSSL DTRGIRESHL RIMLQKIEKS FKQNVRRNFT  1200
SKNIVCQNGI AAENEAGEAD SSPNCSAGIS SPSSMVCGSN SDTLDTSSLF KIELGRNEME  1260
KKGAMKRYQD FQKWTWKECF NSLTLHAMKY GKKRCSELLT TCDWCFDSYL AEDPDSVSCH  1320
QTLNAANKSS NFSEHVIQCK VKRKLEPGVC DTSLPLGIRL LKALLAFIEV SVPPEALESF  1380
WMEIHRKTWA TKLNMSSSPE ELLQILTVLE NATKRDFLSA NFEMTKELLG TSISTESALF  1440
GSTDLGPLPV LPWIPKTTAA VALRLFELDG SITYIQHEKA EPSEDKSAKV HLKLPARYSP  1500
FKNKEIELKG PRQYEHVNEE RLTDLHSKRN SQKRRRGGRD QGYGTKWPRR VPGLKSDSNR  1560
RNARENEKFN IGSKQGRRAN AKGSGRGLRT VRRRRTEMMV AEEPVIGRMS NTVGPSSYGG  1620
SLRNLGEENW GVEKVRMDVD DADNSNSVEA EESDDNVEAE GYEQGNWEQS FNRASNRWNR  1680
TVMEMT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKE
2	444	460	RRQKEELRREREAVKRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G049300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599156.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2C9U6R4	0.0	A0A2C9U6R4_MANES; Uncharacterized protein
STRING	cassava4.1_000118m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Manes.17G049300.1.p