PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G047300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 392aa MW: 43444.1 Da PI: 8.9237

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G047300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	96	156	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Manes.17G047300.1.p 96 PQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 156 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	98	154	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-28	99	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MLILLYHNLP KFLLSTPSKR EAHVATCSLS VYSLFRRIPL WEEMLGNCEK MVVISPTTNE 60 WPQNQIDEKS LMPSTSKLME KRGQELSQPQ HQQQQPQQAL KCPRCDSSNT KFCYYNNYSL 120 SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPNP AVEGATSVSG ANPNLPSQTQ 180 IDISSTSNHI NPLFYGLPTN PSEMNLPFTG RFNSRVSSSV DTVSVSGYDL QPQLNALALG 240 FSSGIMSNEA NGFNPAKQIQ DVVTSSSLLS RSIFGSSSST MTSPTMATLL ASNLHQQKFD 300 IKDFRAPNHF QTLTPFEDLQ MSGNFESGIS MKGVKIEQDK SRLEWNMPCQ NQMEQIGFSS 360 SDPSIYWNAA TSTVGAWHDP PNIGSSITPL I*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MLILLYHNLP KFLLSTPSKR EAHVATCSLS VYSLFRRIPL WEEMLGNCEK MVVISPTTNE  60
WPQNQIDEKS LMPSTSKLME KRGQELSQPQ HQQQQPQQAL KCPRCDSSNT KFCYYNNYSL  120
SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPNP AVEGATSVSG ANPNLPSQTQ  180
IDISSTSNHI NPLFYGLPTN PSEMNLPFTG RFNSRVSSSV DTVSVSGYDL QPQLNALALG  240
FSSGIMSNEA NGFNPAKQIQ DVVTSSSLLS RSIFGSSSST MTSPTMATLL ASNLHQQKFD  300
IKDFRAPNHF QTLTPFEDLQ MSGNFESGIS MKGVKIEQDK SRLEWNMPCQ NQMEQIGFSS  360
SDPSIYWNAA TSTVGAWHDP PNIGSSITPL I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G047300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599842.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2C9U570	0.0	A0A2C9U570_MANES; Uncharacterized protein
STRING	cassava4.1_010897m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	9e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.17G047300.1.p