PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G042800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 307aa    MW: 33836.7 Da    PI: 9.5968
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G042800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.83.5e-3644101259
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                          +++ lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvP+Gggr++++
  Manes.17G042800.1.p  44 QSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPIGGGRKNKR 101
                          57889***********************************************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2345101IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3147100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.41948102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGLSSKQVSS DGLDWSQTLL QQARTLELPK PPIVRGQQQQ NQQQSEPLKC PRCDSTNTKF  60
CYYNNYNKSQ PRHFCKTCKR HWTKGGTLRN VPIGGGRKNK RLKTSKNTAK TSSAAATRSA  120
TSTRTNSGSI INRVNPQIVI QAQHQKQNLP LAHGDQKSVS EIMCQAMISP PSLALQQNSM  180
SCSNFSSKSF NTGNSGVFLG STLSLPQNQG LHFPYSSSST FDTHPSLIST SLQSSNLYNY  240
RSGEAMEDST ITTVMPATSN TISHQPWQVP NASCGMDMTS YWNWDDIDTF VSTNLNVPWD  300
DSELKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G042800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599985.10.0dof zinc finger protein DOF1.4-like
TrEMBLA0A2C9U4V30.0A0A2C9U4V3_MANES; Uncharacterized protein
STRINGcassava4.1_034118m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-29OBF-binding protein 3