PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G039700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 874aa    MW: 95803.1 Da    PI: 7.6033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18335434198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +
  Manes.17G039700.1.p 335 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMRLQAGDIVTFSRLE 423
                          89**************************555666777***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Manes.17G039700.1.p 424 -PEGKLVMGFRK 434
                          .77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904198IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.4E-30331440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-20332434IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-23333434No hitNo description
PROSITE profilePS5086311.335335436IPR003340B3 DNA binding domain
SMARTSM010191.3E-20335436IPR003340B3 DNA binding domain
PfamPF023626.1E-16335434IPR003340B3 DNA binding domain
PROSITE profilePS5105013.718562612IPR011124Zinc finger, CW-type
PfamPF074961.4E-11567609IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MSAAPSTSSS STSKKCFNSD CVDFKSRKGW RLRSGEFAEL CDRCASAYEE GRFCETFHLS  60
ATGWRCCDSC GKRVHCGCIV SIHAFTLLDA GGIECMTCAR KNIVLTSNSA WPPSFFYNTP  120
LSERFKDLSV KSWSQLAGSG PVPWRQAPSL FNSSIPHSEL HPRNLYEIDR LNPSERSSAP  180
SLEKGRVEDF PDRLVNGSLK LGTRDILENG NAGTSSEEKP GVCLGISQHP VLKEDPSTPQ  240
LGMAISFASL NESNGQIGGL GTPLRQTAPP LLAKQFHGNL HNGVDSSPDT QIRIGRPRAD  300
ARGRSQLLPR YWPRFTDEEL QQISGNSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY  360
FPPISHPEGL PLKVQDSKGK EWVFQFRFWP NNNSRMYVLE GVTPCIQNMR LQAGDIVTFS  420
RLEPEGKLVM GFRKASTAPS SDLDNDTSKA GNGVSTNGDV ELVDPSPWSK VDKSGYIAKE  480
VLEAKSSIKK RKSSTLGSKS KRLRIENEDM IELKLTWEEA QRLLRPPPDH VPSVVMIEGF  540
EFEEYEDAPI LGKATIFATD NLGQKIQWVQ CEDCFKWRKL PANALLPSKW TCSSNSWDLE  600
RSLCSAAQEL TAEQLEDLLP SCNLAASKKM KAAKQDAENE ALEGLDTLAN LAILGENEAL  660
PTSSQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCQTVKRRFK TLMMKREKKQ  720
SEKEAETTRK KQQETLPEKL LDDDPSPSTN TGSSSPNKKK VVSEGSDDDP NRSKSSTSPF  780
KGQIDLNIQP EREEELSPGS DCGSMMKMLQ DARQQMLSSD GDNISAGNQL LAGHGMGENI  840
SNGISLGTIH QESQKDHPSA FSMKVSASSP AAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643134382127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599153.10.0B3 domain-containing protein Os07g0563300-like isoform X4
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2C9U4S20.0A0A2C9U4S2_MANES; Uncharacterized protein
STRINGcassava4.1_001569m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-161HSI2-like 1