PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G033100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 36055.3 Da PI: 6.5128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.5e-15 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G +W+ +r g+ R++k+c++rw +yl Manes.17G033100.1.p 5 KGKWSPEEDHKLISYIRRHGIWNWNEMPRAAGLSRSGKSCRLRWMNYL 52 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 59 | 100 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g++++eE+e + ++++ lG++ W++Ia++++ gRt++++k++w+ Manes.17G033100.1.p 59 GNFSKEEEETIFKLHETLGNR-WSAIAAKLP-GRTDNDIKNYWN 100 89*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.521 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-29 | 3 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-22 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.97E-8 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 22.934 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 59 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-11 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-24 | 60 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MALKKGKWSP EEDHKLISYI RRHGIWNWNE MPRAAGLSRS GKSCRLRWMN YLRPFIKHGN 60 FSKEEEETIF KLHETLGNRW SAIAAKLPGR TDNDIKNYWN CKLRKRLRNA ASATKLDRLQ 120 TSGGQLKKKK HHLSESTVPK ETPNSSSSDI FNKTDINQNV APQNITAGLS KVSLGFNGLQ 180 AQSFSREGFH IMEDNGKTLY HPFASDDELL GFFPLMENID FSGEAQYVTW HEEPVYSYDY 240 QDDLFEYPTL WHDEYQAQQP CPVIEDLYTA TAKDEREHEG PGHPFDDFPA CYDRNQISGE 300 IQFLWDYPVL L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 3 | 107 | 5 | 108 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 107 | KLRKRLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G033100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598850.1 | 0.0 | transcription factor MYB4-like | ||||
TrEMBL | A0A2C9U5C5 | 0.0 | A0A2C9U5C5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030905m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 3e-49 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G033100.1.p |