PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G030200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GeBP | ||||||||
Protein Properties | Length: 180aa MW: 20426.6 Da PI: 10.5722 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 81.4 | 1.3e-25 | 66 | 145 | 2 | 81 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 lfqrlwse+Dei++L G+idf++++g++ +d++ f++f+k+s++f+vs +ql +K+ rLKk +++++k k k +f Manes.17G030200.1.p 66 LFQRLWSEDDEILVLEGIIDFTENKGVDHAKDMNSFFDFIKSSLHFDVSLNQLKDKVLRLKKSLRNMKAKGKWVKIRHFL 145 79******************************************************************997777666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-20 | 67 | 137 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEENPLKTTK HRSKSLASTQ VAVKSTAAVK RGSETDRDPK ESKRSKKKDS ESDGSVDKPE 60 DIKKQLFQRL WSEDDEILVL EGIIDFTENK GVDHAKDMNS FFDFIKSSLH FDVSLNQLKD 120 KVLRLKKSLR NMKAKGKWVK IRHFLKPIIK NLLICGKRYG AAKQLVGRSD LILKSNGKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G030200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021666793.1 | 3e-72 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A2C9U4F8 | 1e-125 | A0A2C9U4F8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030371m | 1e-126 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-18 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G030200.1.p |