PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G016500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 377aa    MW: 42965.1 Da    PI: 7.7565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G016500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-53101391129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+++yLkkkv+ +++++ evikevd++kvePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg
  Manes.17G016500.1.p  10 VPPGFRFHPTDEELLHYYLKKKVSFQRFDM-EVIKEVDLNKVEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATG 98 
                          69****************************.99**************963433332556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  Manes.17G016500.1.p  99 RDKCIRN-SFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 139
                          ******9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-596162IPR003441NAC domain
PROSITE profilePS5100557.51410162IPR003441NAC domain
PfamPF023658.3E-2811138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAMASSAGGV PPGFRFHPTD EELLHYYLKK KVSFQRFDME VIKEVDLNKV EPWELQERCR  60
IGSTPQNEWY FFSHKDRKYP TGSRTNRATH AGFWKATGRD KCIRNSFKKI GMRKTLVFYK  120
GRAPHGQKTD WIMHEYRLED GDDIQGNSAA EDGWVVCKVF KKKNLFKVGN GGTSCINSSD  180
HQQLNTSIIQ PRSFMHNKDN QFLLIQSPTS THHQPAFELN KSELGLHHPY PHMTAATPHY  240
SLLQSQNLMP THDYSSALGS STPLMAKQFM LTARDCENGS EDLRYPQSCE PGLEEGTCEP  300
PNHHHQQMGV GGRSDHQHQH QGLNEWSMLD RIVGSHLGNE NASKEVRFDD RNDASSVHPI  360
NHLSLRAEMD FWGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5141649170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G016500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051990.0KR605199.1 Manihot esculenta NAC transcription factors 61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599948.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-153BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2C9U3R60.0A0A2C9U3R6_MANES; Uncharacterized protein
STRINGcassava4.1_026446m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-155NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]