PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G010300.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 264aa    MW: 29514.3 Da    PI: 10.0434
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G010300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-29195245252
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+
  Manes.17G010300.3.p 195 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQR 245
                          9*************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-14192248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-26193246IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-21195245IPR006447Myb domain, plants
PfamPF002492.0E-6196245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PASTWRRTEE EMGLGFLKRA LDSRNTVSSM AKPDTCFELS  60
LSNPRVSESN SNHFHLLQNT SNCNGKDVFN YLQQNQYQHH LQQNHLLHHH PLFQQQQGLS  120
QELGLFRPIR GIPLYQNPPL FSFSQQPLDS TGSQTSSLAT NNSSSTGLNP YNQSPALMRS  180
RLMSRFPAKR GMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQRVSQIL STCFSSGSDG AAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-15196245453Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G010300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3827903e-49FQ382790.1 Vitis vinifera clone SS0ABG43YJ15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598391.10.0probable transcription factor KAN2 isoform X3
SwissprotQ9C6161e-55KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A2C9U3U90.0A0A2C9U3U9_MANES; Uncharacterized protein
STRINGcassava4.1_009968m1e-180(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-39G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]