PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.17G009200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 198aa MW: 22378.6 Da PI: 10.4423 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.2 | 3.7e-33 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Manes.17G009200.2.p 23 KPRLRWTADLHHRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-32 | 20 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.245 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 23 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-22 | 125 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MERGVLGGNY PYENGVVMSR DPKPRLRWTA DLHHRFVDAV TKLGGPDKAT PKSVLRLMGL 60 KGLTLYHLKS HLQKYRLGQQ QAKKQTAKEQ TKESGSSYVN FSNHSSAVST SSSAIEIQQG 120 PGELPVTEPL KSQMEAHKRL EEQLEVQKKL QMRIEAQGKY LQEILEKAQK SLSLDMKCNG 180 KSLGFLYQQT RRERRNQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 23 | 76 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.17G009200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599014.1 | 1e-131 | LOW QUALITY PROTEIN: myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 6e-74 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2C9U3I5 | 1e-143 | A0A2C9U3I5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016717m | 1e-144 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 7e-60 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.17G009200.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|