PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.17G009200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 269aa MW: 30225.2 Da PI: 8.8337 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.3e-33 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Manes.17G009200.1.p 23 KPRLRWTADLHHRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-32 | 20 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.245 | 20 | 80 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.4E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.76E-16 | 23 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.0E-22 | 125 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MERGVLGGNY PYENGVVMSR DPKPRLRWTA DLHHRFVDAV TKLGGPDKAT PKSVLRLMGL 60 KGLTLYHLKS HLQKYRLGQQ QAKKQTAKEQ TKESGSSYVN FSNHSSAVST SSSAIEIQQG 120 PGELPVTEPL KSQMEAHKRL EEQLEVQKKL QMRIEAQGKY LQEILEKAQK SLSLDMKCNG 180 NNLDLALSNL IQSMNEEGRK DNITDLKDIY NKENPWAFYI SKQGEREEIN DLEHKVEAHP 240 IHLDLNTKGT YDSLSVNGST IGTQHAFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-19 | 23 | 79 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.17G009200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599014.1 | 0.0 | LOW QUALITY PROTEIN: myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 4e-83 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2C9U3W5 | 0.0 | A0A2C9U3W5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016717m | 1e-130 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-69 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.17G009200.1.p |
Publications ? help Back to Top | |||
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