PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.16G137900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 325aa MW: 36863.8 Da PI: 5.3804 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 36.1 | 1.7e-11 | 45 | 118 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 Wt +e l L++ +e + r + ++W+ + +++ + r+++qC++kw++l +y +ik++++k +++s Manes.16G137900.1.p 45 WTTKEALILVNEIAAVEGDCLRVLSSYQKWKIIVENCTVLDVPRTANQCRSKWNSLLAEYNQIKQWDSKS-KTDS 118 ********************************************************************95.3433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-5 | 44 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.7E-9 | 44 | 119 | No hit | No description |
PROSITE profile | PS50090 | 7.259 | 45 | 101 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MEATEATNEF QKKGTKRKKG VEDSSKKSCD AGAPRTTRSQ VAPDWTTKEA LILVNEIAAV 60 EGDCLRVLSS YQKWKIIVEN CTVLDVPRTA NQCRSKWNSL LAEYNQIKQW DSKSKTDSYC 120 FLGCEKRKQL GLPENFDEEL FKAIDDYVRA QKNCPDTDPD TDTEAQADLL GVIAKLGSKK 180 KLRTLLGEKP QNCCRKEPHL EVHTEEEPQN SLKEENPQMC CEKEKPQNIH AEEMPQKTLM 240 EEKPKNDYMQ KKKMTAAEEM EHMMVERLRE NAELIHAMVQ TNLPEVADFG ATDFVRGQGD 300 KIIARLGDIV NILNQYPHLA QASD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.16G137900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597956.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2C9UCL9 | 0.0 | A0A2C9UCL9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011610m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6732 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31270.1 | 6e-58 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.16G137900.1.p |