PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G133200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 342aa    MW: 37348.7 Da    PI: 6.3952
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G133200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.4e-09443437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         + C+ +++  ++lfC+ ++ +lC +C ++ H        H
  Manes.16G133200.1.p  4 KLCDSCKSATATLFCRADSAFLCVNCDSKVHAAnklasrH 43
                         58***************************99544555555 PP
2zf-B_box26.11.7e-084691342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Manes.16G133200.1.p 46 VWVCEVCEQAPAHVTCKADAAALCITCDRDIHSAnplarrHERVPV 91
                         689*****************************66899999*99986 PP
3CCT70.15.6e-24278320143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+
  Manes.16G133200.1.p 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 320
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708148IPR000315B-box-type zinc finger
SMARTSM003365.3E-15148IPR000315B-box-type zinc finger
PfamPF006431.1E-6443IPR000315B-box-type zinc finger
CDDcd000217.76E-10548No hitNo description
PROSITE profilePS5011910.6944491IPR000315B-box-type zinc finger
PfamPF006437.1E-74691IPR000315B-box-type zinc finger
CDDcd000214.94E-94791No hitNo description
SMARTSM003362.8E-94991IPR000315B-box-type zinc finger
PfamPF062031.1E-17278320IPR010402CCT domain
PROSITE profilePS5101716.787278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKVHAANKLA SRHGRVWVCE VCEQAPAHVT  60
CKADAAALCI TCDRDIHSAN PLARRHERVP VTPFYESVGV THAAKTNAVN FLDDRYFSDV  120
DRDADVSREE AEAASWLLPN PPNPKVMESP DLNTGQYVFS DVDPYLDPGY GPAAVDPKLE  180
AQEQNSSGTD GVVPVQSKSV QASLVNDHCF ELDFTGSKPF AYGYNTQSLS NSLSSSSLDV  240
GVVPDGGNMT DISNQYSRTV SNGMESTNPT VQPSAVDREA RVLRYREKRK NRKFEKTIRY  300
ASRKAYAETR PRIKGRFAKR IDMEVEADGG SMYGFGVVPS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G133200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597666.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-148COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2C9UBM30.0A0A2C9UBM3_MANES; Uncharacterized protein
STRINGcassava4.1_011192m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-148CONSTANS-like 4