PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G117400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 39122.6 Da PI: 4.2145 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.5 | 2.7e-11 | 106 | 186 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ ++ +l+r++l+ +W ev++k+ ++ +++r+ +qCk ++ l+++ykk+k+ ++ s+++yf++++ Manes.16G117400.2.p 106 WSEHEKFVLLEVWGDRFLQLGRNSLRSEDWVEVAEKVsESSKIKRTETQCKLMMDALKRKYKKEKAKGVNN-----SKWAYFRKMD 186 *************************************666789**********************999984.....58******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-19 | 104 | 188 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDDIEDDAGF PPKAHSFNRS RKLPAYSLYD QDYVVDDDDD DEFDEDQDSD DSYSSRRYSH 60 NLDKQNNDFD RYPKRQKLKS SVSNYELVPR SGRLLSYEEG NFSPDWSEHE KFVLLEVWGD 120 RFLQLGRNSL RSEDWVEVAE KVSESSKIKR TETQCKLMMD ALKRKYKKEK AKGVNNSKWA 180 YFRKMDMLMN QELGGGSGFS LACGVDSGEF VFMDTHVYLD RANGNDEMRD SPCESENEEE 240 EEEGAGNGGS DGVKGLKVLA DSVQKFGEIY EKIESSKREQ MMELERMRVE FQRELELQKK 300 QILERAQAEI AKIREGDDDV DEEEDTDDED DSGEDVSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G117400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597395.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_021597396.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_021597398.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_021597399.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A251J1D4 | 0.0 | A0A251J1D4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011306m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 5e-76 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G117400.2.p |