PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G117400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 339aa    MW: 39122.6 Da    PI: 4.2145
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G117400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.52.7e-11106186286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++e  +L+e+  ++  +l+r++l+  +W ev++k+ ++ +++r+ +qCk  ++ l+++ykk+k+   ++     s+++yf++++
  Manes.16G117400.1.p 106 WSEHEKFVLLEVWGDRFLQLGRNSLRSEDWVEVAEKVsESSKIKRTETQCKLMMDALKRKYKKEKAKGVNN-----SKWAYFRKMD 186
                          *************************************666789**********************999984.....58******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-19104188No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDDIEDDAGF PPKAHSFNRS RKLPAYSLYD QDYVVDDDDD DEFDEDQDSD DSYSSRRYSH  60
NLDKQNNDFD RYPKRQKLKS SVSNYELVPR SGRLLSYEEG NFSPDWSEHE KFVLLEVWGD  120
RFLQLGRNSL RSEDWVEVAE KVSESSKIKR TETQCKLMMD ALKRKYKKEK AKGVNNSKWA  180
YFRKMDMLMN QELGGGSGFS LACGVDSGEF VFMDTHVYLD RANGNDEMRD SPCESENEEE  240
EEEGAGNGGS DGVKGLKVLA DSVQKFGEIY EKIESSKREQ MMELERMRVE FQRELELQKK  300
QILERAQAEI AKIREGDDDV DEEEDTDDED DSGEDVSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G117400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597395.10.0trihelix transcription factor ASIL2
RefseqXP_021597396.10.0trihelix transcription factor ASIL2
RefseqXP_021597398.10.0trihelix transcription factor ASIL2
RefseqXP_021597399.10.0trihelix transcription factor ASIL2
TrEMBLA0A251J1D40.0A0A251J1D4_MANES; Uncharacterized protein
STRINGcassava4.1_011306m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-76Trihelix family protein