PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G113800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 602aa    MW: 65147.3 Da    PI: 7.971
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G113800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.3e-14120159242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Manes.16G113800.1.p 120 RQKQCNCKHSRCLKLYCECFASGTYCDG-CNCANCYNNVEN 159
                          689*************************.********9875 PP
2TCR50.93.1e-16204243140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Manes.16G113800.1.p 204 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 243
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-14119159IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.584120244IPR005172CRC domain
PfamPF036381.6E-10121156IPR005172CRC domain
SMARTSM011148.4E-20204245IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12207242IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MGEGEGNEFP PKKAAQSDKQ GSSDFPAKKL ARQLDFTQGN VVLPDHPQSQ QQQQQPATLP  60
LSQKPVIVTP QSQLQQQPQV VAMPAAPPPQ QHPPAKIVKP ESPKSKPRPN AELKDSTPKR  120
QKQCNCKHSR CLKLYCECFA SGTYCDGCNC ANCYNNVENE GARREAVEAT LERNPNAFRP  180
KIASSPHGAR DSREENLEGL LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK  240
NFEGSEERQA LFHGDHTNNI AYIQQAANAA ITGAIGSSGY ASPPISKKRK VQELLFGPTA  300
KDPSFHRLGH FHQAVNTRPS APSCSLGTNP VARATSTATL GPSKFTYRSL LADIIQPQDL  360
KELCSVLVVV SSEAGKTLAD QRNATEKRVE DQTEASLASS TQKSLQSQEA NVDKIIAYDC  420
CSANQVDKVG PEDSSSDGAD MPKGRPMSPG TLALMCDEQD TMFMAAASPN VLTGHGCSGT  480
SQLPCGQGMT EIYAEQERIV LTKFRDCLNR LITYGEIKET KCSLLARTEL GNQKDQSSNG  540
TMNARAELAN QQGHYSNGIT NHIILPTSRT SQMVTSMVAT SSNDLPRVSA LPQHGDNKPI  600
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-331112531132Protein lin-54 homolog
5fd3_B3e-331112531132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G113800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142821e-105AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597755.10.0protein tesmin/TSO1-like CXC 5 isoform X4
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2C9UBV10.0A0A2C9UBV1_MANES; Uncharacterized protein
STRINGcassava4.1_004006m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein