PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G096400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 385aa    MW: 43073.9 Da    PI: 8.8193
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G096400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.9e-2577120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Manes.16G096400.1.p  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                          79***************************************986 PP
2QLQ57.15.6e-20943236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FTa+Q+q+L++Q+l++Ky++++ P+P++Ll+ i+
  Manes.16G096400.1.p  9 PFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIK 43
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.944944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.59677121IPR014977WRC domain
PfamPF088791.4E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMSGTNKFPF TASQWQELEH QALIFKYMVS GIPIPSDLLF TIKRSCLDSP FSSKLFPRQN  60
SHVGWSCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
IATQTATVNP SITPTVSSIT KSHSTLSTPP SHSLSLLSSE SHQNHLHQSG YHSHLNHHFL  180
SSHAASRPPG NFLSPDEKST PLLFNSGGSC SLSNTDYRNK SAYGLKEEVD EHVFFSEPSG  240
SMRNLSGSSL DNAWQFTPLT ISSSSTSSSS NQRSVSNLHN EYAYLQLHSL SDHGDPKQQK  300
QYQQSYLLGS DMKCVLPTKI EKEEPQKTVH HFFDEWPPKN KASWLGLDDK SPNSTSVSTT  360
RLSISIPSSS HDFPIFNSRT HDDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G096400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826624e-61AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596908.10.0growth-regulating factor 1-like
TrEMBLA0A2C9UAA20.0A0A2C9UAA2_MANES; Uncharacterized protein
STRINGcassava4.1_027848m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-55growth-regulating factor 5