PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G090000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 512aa    MW: 56435.5 Da    PI: 5.1372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G090000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11293338555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  Manes.16G090000.1.p 293 HSIAERLRREKIAERMKNLQELVPNS-----SKIDKASMLDEIIEYVKFLQ 338
                          99***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-11286342No hitNo description
SuperFamilySSF474592.49E-16286347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.104288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16290347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMDEYIDHYF SSTSWADGDV KESSCWGYVE TGQPNLLLPA SIRLYENDKG NPPLSMISSK  60
PSVEKLPITL GVESNYAVDK CLISGNTLLQ NVSQSCRDKA SPTMNCSLQY DTALPTLASF  120
NLTYPNQLPV VDELTSSPSL AKAGIVHNGI DSERLEYHRS FKEMQNLSMA RLRPSASNEG  180
VLSMSALMGQ DSLQQLGLQE GNLDDETDFM RKRYVSMDRI LQLDKLSATS TIEDKVDLQS  240
YPFSPFTDRP NIKITTDEVL FPSQTTSASP SNGCNRTLKP RVRARRGQAT DPHSIAERLR  300
REKIAERMKN LQELVPNSSK IDKASMLDEI IEYVKFLQLQ VKVLSMSRVG AAAGAIIPLI  360
ADVQAEGSNR HSLGPSVGLG IDISPSPDQI AFEQEVLKLM ESNLTTAIQY LQSKGLCLMP  420
IHLATAISSG KKAELSCNGE EEQNFGYANN LVHSNSSSHS SNCSFSGTET HQMSYEDNIM  480
SEQHSSKGNI ANEYNGMIDK QEKAKMNNLY Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G090000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596962.10.0uncharacterized protein LOC110603516
TrEMBLA0A2C9UB650.0A0A2C9UB65_MANES; Uncharacterized protein
STRINGcassava4.1_031455m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150611314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-54LJRHL1-like 3