PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G085300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 616aa    MW: 70157.7 Da    PI: 6.5133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G085300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix101.66.2e-32428512186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev aLi++r+++e+++++  lk+plWeevs+ m++ g++rspk+Ckekwen+nk+++k+ke+ kkr s++s+ c+yfdql+
  Manes.16G085300.2.p 428 RWPKAEVEALIQVRSSIETKFQEPGLKGPLWEEVSSLMASMGYQRSPKRCKEKWENINKYFRKTKESTKKR-SKQSKVCSYFDQLD 512
                          8*********************************************************************8.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0054425487IPR001005SANT/Myb domain
PROSITE profilePS500907.12427485IPR017877Myb-like domain
CDDcd122031.82E-27427492No hitNo description
PfamPF138373.0E-22427514No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MQPSYGGPEF HRHHHHHQFM ENDECCSSVL PISNPSQNLN LPFQSHPPQH KQLEHIFLQH  60
PQNSIAHQLF HPQHQPQLQH FRQFELHEER LHSEVRQQHQ QGQALSPHPP FFSMKFKLGL  120
DQDGGSKESA LNRQEASDFI NGNEHNPPQV PLVIPHCWHP QEDSASIKEP FWKQLSASKN  180
KQQYYENGEP EAQRNKNNHY KLLEIQQIDE RSERCTDMEN QYGPFGELEA IYSLAKAGEA  240
NQTGSGSALT GETSPKHAGL SVPFSAVHSQ NVGAGNAGIG VDHGSENSIG EEASLRKSQK  300
RTRKRKMKKK LSSMAGFFEN LVKKVMDHQE SLHRNFLEVI ERMDKERTQR EEAWRCQEAA  360
KYNREAVSRT HEQALASSRE EQIVSYVEKI TGQSIDLPAK KTSLLLQPEI PKEPTKESTP  420
ITTDNHSRWP KAEVEALIQV RSSIETKFQE PGLKGPLWEE VSSLMASMGY QRSPKRCKEK  480
WENINKYFRK TKESTKKRSK QSKVCSYFDQ LDQLYSRSFI NSPSFNKSST PLSSSEIEVE  540
KQGYSGLLEA FIAGRDIATS TNPSNGNVII AEKGSFKLEL DSNIKEKVEG GSYEQETEDH  600
EDDFDEGEED QSEEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295308RKSQKRTRKRKMKK
2295310RKSQKRTRKRKMKKKL
3299306KRTRKRKM
4301306TRKRKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G085300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596805.10.0trihelix transcription factor GTL2-like
RefseqXP_021596807.10.0trihelix transcription factor GTL2-like
TrEMBLA0A251IZR60.0A0A251IZR6_MANES; Uncharacterized protein
STRINGcassava4.1_004069m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-46Trihelix family protein