PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G085300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 616aa MW: 70157.7 Da PI: 6.5133 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 101.6 | 6.2e-32 | 428 | 512 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e+++++ lk+plWeevs+ m++ g++rspk+Ckekwen+nk+++k+ke+ kkr s++s+ c+yfdql+ Manes.16G085300.1.p 428 RWPKAEVEALIQVRSSIETKFQEPGLKGPLWEEVSSLMASMGYQRSPKRCKEKWENINKYFRKTKESTKKR-SKQSKVCSYFDQLD 512 8*********************************************************************8.77888********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0054 | 425 | 487 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.12 | 427 | 485 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.82E-27 | 427 | 492 | No hit | No description |
Pfam | PF13837 | 3.0E-22 | 427 | 514 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MQPSYGGPEF HRHHHHHQFM ENDECCSSVL PISNPSQNLN LPFQSHPPQH KQLEHIFLQH 60 PQNSIAHQLF HPQHQPQLQH FRQFELHEER LHSEVRQQHQ QGQALSPHPP FFSMKFKLGL 120 DQDGGSKESA LNRQEASDFI NGNEHNPPQV PLVIPHCWHP QEDSASIKEP FWKQLSASKN 180 KQQYYENGEP EAQRNKNNHY KLLEIQQIDE RSERCTDMEN QYGPFGELEA IYSLAKAGEA 240 NQTGSGSALT GETSPKHAGL SVPFSAVHSQ NVGAGNAGIG VDHGSENSIG EEASLRKSQK 300 RTRKRKMKKK LSSMAGFFEN LVKKVMDHQE SLHRNFLEVI ERMDKERTQR EEAWRCQEAA 360 KYNREAVSRT HEQALASSRE EQIVSYVEKI TGQSIDLPAK KTSLLLQPEI PKEPTKESTP 420 ITTDNHSRWP KAEVEALIQV RSSIETKFQE PGLKGPLWEE VSSLMASMGY QRSPKRCKEK 480 WENINKYFRK TKESTKKRSK QSKVCSYFDQ LDQLYSRSFI NSPSFNKSST PLSSSEIEVE 540 KQGYSGLLEA FIAGRDIATS TNPSNGNVII AEKGSFKLEL DSNIKEKVEG GSYEQETEDH 600 EDDFDEGEED QSEEV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 308 | RKSQKRTRKRKMKK |
2 | 295 | 310 | RKSQKRTRKRKMKKKL |
3 | 299 | 306 | KRTRKRKM |
4 | 301 | 306 | TRKRKM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G085300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596805.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
Refseq | XP_021596807.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A251IZR6 | 0.0 | A0A251IZR6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004069m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13998 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 7e-46 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G085300.1.p |