PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G081100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23436.5 Da PI: 8.2056 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.5 | 9.6e-38 | 10 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCaaCk+lr+kCa+dC+lapyfp++++++f n+hklFG+s++lk+l++l+++e +++a++s++y+A+arardPv G+ ++i++l++q+e Manes.16G081100.1.p 10 ACAACKYLRKKCAADCPLAPYFPSNHSSDFLNAHKLFGVSKILKTLNKLRTSEeKKNAIKSMIYQANARARDPVGGCSRIISQLKNQIEF 99 7************************************************766659*********************************** PP DUF260 90 lkaelallkeel 101 + +l+l+++++ Manes.16G081100.1.p 100 YQLQLSLVRQQI 111 ********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-36 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MITASTGSQA CAACKYLRKK CAADCPLAPY FPSNHSSDFL NAHKLFGVSK ILKTLNKLRT 60 SEEKKNAIKS MIYQANARAR DPVGGCSRII SQLKNQIEFY QLQLSLVRQQ IEFHQRLPLN 120 DDLQVSPIDI YDATTLESSG YPTPSIVQKR SYQIDDAVAN IDMEKLSLSG LSGHGSQPSS 180 SGNEAVAVDA SQDVKPFLGE FHERDNTVGL LKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-24 | 3 | 111 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-24 | 3 | 111 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G081100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596673.1 | 1e-158 | LOB domain-containing protein 7-like | ||||
Swissprot | Q9SSM9 | 1e-32 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A2C9UAT6 | 1e-157 | A0A2C9UAT6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025975m | 1e-152 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 8e-35 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G081100.1.p |