PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G071700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 604aa    MW: 65470.1 Da    PI: 8.1931
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G071700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-14130169242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          + k+CnCk+s+Clk+YCeCfaag +C+  C+C +C N+ e+
  Manes.16G071700.1.p 130 KLKQCNCKNSRCLKLYCECFAAGIHCNG-CNCLNCYNNVEH 169
                          679*************************.********9876 PP
2TCR51.71.7e-16214253140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN+e
  Manes.16G071700.1.p 214 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNSE 253
                          589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-14129169IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.193130254IPR005172CRC domain
PfamPF036384.3E-11132166IPR005172CRC domain
SMARTSM011146.2E-20214255IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.6E-13217252IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEQSEAISDF APKKLARQLD FTAVCRASAN VVLPPSQASQ SHIKLQPHAP QPSSQQVQPQ  60
PLLHLQLQTS PKQPQAMPQL HARPQQVPVV RRIPHPVQKH PLPTMPLSKQ ESPGSRPRNN  120
AEAKDGTPKK LKQCNCKNSR CLKLYCECFA AGIHCNGCNC LNCYNNVEHE ATRQEAVGAI  180
LERNPHAFRP KIASSPCGSL DTREDPREAQ MIGKHNKGCH CKKSGCLKKY CECFQANILC  240
SDNCKCMDCK NSEGSEEMRS LFLGNHNGTT CMQQAANAAI NGAIGSSGYG TPIASKHRKS  300
EEILSSVATK DQSAKYEKEN HVRNSAASSP SFSAPVSHSA NATALGASKF IYKSPLAGIL  360
QPQDVKEMCS LLVILSEETK KALEGKKDKQ PEKGNDHFFE PTSALCIQGK EDNVNGPDIH  420
RTLPDDCVNG IKAGRERNNG SGTGGDLENG RPASPEIDLM CHEQEMVFME AGPAAGIGGL  480
SQNKTQISSN GHECSEVYAD QEKLILTRFR DFLNRLITCG SIKETMNSPS AKTKMENQQE  540
PADRLIIHAG TEIGNHKKAY SNGDAKSSVV ATSSNVVLPL VSAMPVKNGD INPEKKAKLE  600
ENS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2813226212131Protein lin-54 homolog
5fd3_B4e-2813226212131Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G071700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096741e-40AP009674.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04O06, TM0487, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596115.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2C9U9P90.0A0A2C9U9P9_MANES; Uncharacterized protein
STRINGcassava4.1_003980m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2272824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-105Tesmin/TSO1-like CXC domain-containing protein