PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G055200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 318aa    MW: 36176.6 Da    PI: 7.356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G055200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.94.6e-54101391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Manes.16G055200.2.p  10 VPPGFRFHPTDEELLYYYLKKKVSYEAVDL-DVIREVDLNKLEPWDLKdKcRIGSsPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69***************************9.99**************943433332556******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Manes.16G055200.2.p  99 RDKAIHLSNSQRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                          ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-596159IPR003441NAC domain
PROSITE profilePS5100558.03610159IPR003441NAC domain
PfamPF023653.0E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMGGNGQLSV PPGFRFHPTD EELLYYYLKK KVSYEAVDLD VIREVDLNKL EPWDLKDKCR  60
IGSSPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSQR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDNSEVQEDG WVVCRVFKKK NQSRGFFPEA VQEHWSHMNA  180
SSSSASMEQK QNHMQAPYDY SFDGSMHLPQ LFSPESAVAP SFVSPFPMNS MDIECSQNLL  240
KLTSSGCGIV QPGERFNSDW SFLDKLLASH QSLDQHSQSR GNPSSLVVDH VGCSSQQKFP  300
FPYLGCESDI LKFSKQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-53716414170NO APICAL MERISTEM PROTEIN
1ut4_B4e-53716414170NO APICAL MERISTEM PROTEIN
1ut7_A4e-53716414170NO APICAL MERISTEM PROTEIN
1ut7_B4e-53716414170NO APICAL MERISTEM PROTEIN
3swm_A4e-53716417173NAC domain-containing protein 19
3swm_B4e-53716417173NAC domain-containing protein 19
3swm_C4e-53716417173NAC domain-containing protein 19
3swm_D4e-53716417173NAC domain-containing protein 19
3swp_A4e-53716417173NAC domain-containing protein 19
3swp_B4e-53716417173NAC domain-containing protein 19
3swp_C4e-53716417173NAC domain-containing protein 19
3swp_D4e-53716417173NAC domain-containing protein 19
4dul_A4e-53716414170NAC domain-containing protein 19
4dul_B4e-53716414170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G055200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052110.0KR605211.1 Manihot esculenta NAC transcription factors 73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597968.10.0protein SOMBRERO-like isoform X2
SwissprotQ9MA171e-123SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0M3R8630.0A0A0M3R863_MANES; NAC transcription factors 73
TrEMBLA0A2C9UA190.0A0A2C9UA19_MANES; Uncharacterized protein
STRINGcassava4.1_028269m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-106NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  4. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  5. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]