PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G049800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 341aa MW: 39002.5 Da PI: 4.7025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G049800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.4e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgk Manes.16G049800.1.p 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFYSPRDKKYPNGSRTNRATRAGYWKATGK 94 79**************************.99**********96434555777**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s +++ vg+kktLv+y+grap+g +t+Wvmheyrl Manes.16G049800.1.p 95 DRPVHS-QKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 **.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-64	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.197	6	158	IPR003441	NAC domain
Pfam	PF02365	5.8E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRPVHS QKRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLIDSLCGT SSSSRLKDSY ALCRVFKKTM QINPKSKEGE NGNVKNDEMW 180 VSDEQFLTED KSGIETCKGR ENEDENFNND YSKFPSDTSS SDVTQGTPFE NAVADDSQAP 240 FASDEANSSA NMYYVGVDFS SNLLQDMQIP NYSSLHYPCP PLELEDFPQI NIAETKPAKS 300 EIMEDYVMYD KYKDCMNGTL EEIFSLCSSQ DNSISLSMQD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-57	1	158	15	168	NAC domain-containing protein 19
3swm_B	4e-57	1	158	15	168	NAC domain-containing protein 19
3swm_C	4e-57	1	158	15	168	NAC domain-containing protein 19
3swm_D	4e-57	1	158	15	168	NAC domain-containing protein 19
3swp_A	4e-57	1	158	15	168	NAC domain-containing protein 19
3swp_B	4e-57	1	158	15	168	NAC domain-containing protein 19
3swp_C	4e-57	1	158	15	168	NAC domain-containing protein 19
3swp_D	4e-57	1	158	15	168	NAC domain-containing protein 19
4dul_A	4e-57	1	158	12	165	NAC domain-containing protein 19
4dul_B	4e-57	1	158	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G049800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605194	0.0	KR605194.1 Manihot esculenta NAC transcription factors 56 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598037.1	0.0	NAC domain-containing protein 96
TrEMBL	A0A0M4G3Q6	0.0	A0A0M4G3Q6_MANES; NAC transcription factors 56
STRING	cassava4.1_024467m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-110	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	Manes.16G049800.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]