PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G046100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 331aa    MW: 36825.5 Da    PI: 6.6165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G046100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Manes.16G046100.1.p 13 RGLWSPEEDEKLINYITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                         788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1666109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+++++E+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Manes.16G046100.1.p  66 KGSFSAQEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26563IPR009057Homeodomain-like
PROSITE profilePS5129417.937860IPR017930Myb domain
SuperFamilySSF466891.56E-2911107IPR009057Homeodomain-like
SMARTSM007171.2E-121262IPR001005SANT/Myb domain
PfamPF002497.6E-161360IPR001005SANT/Myb domain
CDDcd001671.31E-111660No hitNo description
PROSITE profilePS512942661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2564116IPR009057Homeodomain-like
SMARTSM007176.5E-1665113IPR001005SANT/Myb domain
PfamPF002494.2E-1566109IPR001005SANT/Myb domain
CDDcd001676.45E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGHSCCRKQK VRRGLWSPEE DEKLINYITT YGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKKGSFS AQEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPKTHNLIPS HQRASNKVAA GNMLQSQQQP FSIITVNLQM TDPSMEMNPP IITLPAAFSP  180
NAIIQRPSSI QTSSVPILTS VDNQNPNILW TVNGRENSLD SSIFPCVSSI QNTPISPSVT  240
PSWFGILDEN CFWGHNTIAE NFRAPRMDVL QAQGEENNQA NEKVDVAEGV QDMDASFDSS  300
SFGLEFVEST FLSSSTCGDL GSMDDLAWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G046100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346533e-37KM034653.1 Jatropha curcas clone JcMYB033 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598137.10.0transcription factor MYB86-like
TrEMBLA0A2C9U8J40.0A0A2C9U8J4_MANES; Uncharacterized protein
STRINGcassava4.1_025617m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-87myb domain protein 67