PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G040100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 318aa    MW: 36565.1 Da    PI: 6.6495
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G040100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.8e-1525116187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++ + +L+e+  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++  + +   +s++p++++l
  Manes.16G040100.1.p  25 CWSEEATSTLVEVWGKRYLELNRGNLRQKDWQEVADAVnakhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGMLTSSWPFYESL 114
                          7**************************************999999999*************************999888889*******9 PP

             trihelix  86 ea 87 
                          +a
  Manes.16G040100.1.p 115 DA 116
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2623117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGDLIDSVTP STTPHSRPLP IREDCWSEEA TSTLVEVWGK RYLELNRGNL RQKDWQEVAD  60
AVNAKHGHTK KTHRTDVQCK NRIDTIKKKY KIEKARVTSS NGMLTSSWPF YESLDALIGS  120
NFSSKKQASP SLSPSPPVAL PMTSYRRTPS STPPTAVVAL PQKRPLDDGY FRRNYSAMAA  180
AAAAAAESES EEEEEEEEEE GERERERERE SEEDEEGEGI RRLARAIERF GEVYERVESE  240
KLRQMLDLEK QRMKFAKDLE MERMRIFTET QIQLEKIKKG KRSGSNDFLN MVFPHFNKMQ  300
FIQPVDKHLS YHLLPRP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G040100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598141.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A2C9U9J10.0A0A2C9U9J1_MANES; Uncharacterized protein
STRINGcassava4.1_013095m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-43sequence-specific DNA binding transcription factors