PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G034000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WOX
Protein Properties Length: 403aa    MW: 44406.5 Da    PI: 7.4632
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G034000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-1857117257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Manes.16G034000.1.p  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                          89*****************99*************************************995 PP
2Wus_type_Homeobox112.13e-3656118264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
  Manes.16G034000.1.p  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                          689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-748116IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1250121IPR009057Homeodomain-like
PROSITE profilePS5007110.51153118IPR001356Homeobox domain
SMARTSM003898.6E-955122IPR001356Homeobox domain
CDDcd000861.32E-856118No hitNo description
PfamPF000462.2E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNTH QHQWQNDVNS SSLVSTGCHR HPYASVPGSE ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
DLQKQQAHHH APSVTTSITT LTTPSSSSSS SEISPTKGSK KTLSLSSPSV VDVSNSPTCS  180
VNQTYFQTHS EFVPEPFFFP AQPTAAAGSG GTGSFTQGFC FSDLSNVVQV QDNTVGPCTS  240
LLLSEIMCCD ASRKDVHHED KNMRMQPHFS YHVTSPIPPS ISLAPSLTLP TTNPNSNTAQ  300
SIISQIQGAG ESASEGSSGP VRLTVFINDL AFEVGVGPFN LREAFGDDFV LIHSSGQPVL  360
TNEWGVTLHS LQHGASYYLV PLSMSENVSF FFNFSIWFWR MN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G034000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596991.10.0WUSCHEL-related homeobox 9-like
RefseqXP_021596992.10.0WUSCHEL-related homeobox 9-like
RefseqXP_021596993.10.0WUSCHEL-related homeobox 9-like
TrEMBLA0A2C9U8F20.0A0A2C9U8F2_MANES; Uncharacterized protein
STRINGcassava4.1_031877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-61homeobox-3